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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAAGAAGTGATGGATTTGGTTTACAAAAGTGGGAAATTTAGTAAAAAGTTTGAGAAATTTACAGgtaatagcaaccattttgatttgtaaatggtaggtttgagcttgaaaaccagtagtaattaagtaaccaatgaaccataatcatttatgttgcatggtac...

Basic information

species Glycine max
transcript GLYMA13G28660.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G28660.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv05s0020g01880.t01 (Vitis vinifera), 5'ss of exon 8
GCAAGAAGTGATGGATTTGGTTTACAAAAGTGGGAAATTTAGTAAAAAGTTTGAGAAATTTACAGgtaa--tagcaaccattttgatttgtaaatggtaggtttgagcttgaaaaccagta-gtaattaagtaaccaa--tgaaccataatcatttatgttgcatggtac--------------------------------------------------------------------
||| ||| | ||||| |||||| | ||||| |||||||| |||||||||||||||   ||||||||||   |    |  | |  |    | | |||  |     ||  |   |||  |  | || |  || |||| |   | ||   | |||| || |   | ||  ||                                                                     
GCAGGAATTAATGGACTTGGTTAATAAAAGCGGGAAATTCAGTAAAAAGTTTGAGGCTTTTACAGgtatgcttcttaataatagggaaagcagatg-cacccaagacttcataaatgaccaagtcaaaaaataactatcctcaatgtttatcacttgttcagtattttatgatcgacaatgtctgattcttcgatattctgaaaaaacctagatattgacgcggttgattctttgcag