1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CTGTGGACCACTTCAAGAAACAATTTGCATATCTTGAGGAGCATTACGGCAAAGGGGGGACTGTTACTCCCCCTGAGAGGCAACATGCATCATTACCAAGgtatcctaatttctgttactattttttgaaattgttcctttcttctttttccattgttcttttatcttgtcaaattccaatatagaataacccctttatttgctttggaattgccaacttcgctgatttgttgctgtacatgcag
species | Glycine max |
transcript | GLYMA13G28120.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: AAAGGGGGGACTGTTACTCCCCCTGAGAGGCAACATGCATCATTACCAAG ACCTTGTGTATTGTATTCAGACCACTCAATGCAGAATACATCTGAGGTTGCEST: gi|192296005|gb|FG993383.1|FG993383
genomic: AAAGGGGGGACTGTTACTCCCCCTGAGAGGCAACATGCATCATTACCAAGgtatcctaat ... gtacatgcagACCTTGTGTATTGTATTCAGACCACTCAATGCAGAATACATCTGAGGTTGC
EST: AAAGGGGGGACTGTTACTCCCCCTGAGAGGCAACATGCATCATTACCAAG ACCTTGTGTATTGTATTCAGACCACTCAATGCAGAATACATCTGAGGTTGCEST: gi|192296006|gb|FG993384.1|FG993384
genomic: AAAGGGGGGACTGTTACTCCCCCTGAGAGGCAACATGCATCATTACCAAGgtatcctaat ... gtacatgcagACCTTGTGTATTGTATTCAGACCACTCAATGCAGAATACATCTGAGGTTGC
EST: GAGGCAACATGCATCATTACCAAG ACCTTGTGTATTGTATTCAGACCACTCAATGCAGAATACATCTGAGGTTGCEST: gi|151410759|gb|EV280574.1|EV280574
genomic: GAGGCAACATGCATCATTACCAAGgtatcctaat ... gtacatgcagACCTTGTGTATTGTATTCAGACCACTCAATGCAGAATACATCTGAGGTTGC
EST: AANNNNNNNACTGTTACTCCCCCTGAGAGGCAACATGCATCATTACCAAG ACCTTGTGTATTGTATTCAGACCACTCAATGCAGAATACATCTGAGGTTGCEST: gi|51345005|gb|CO985738.1|CO985738
genomic: AAAGGGGGGACTGTTACTCCCCCTGAGAGGCAACATGCATCATTACCAAGgtatcctaat ... gtacatgcagACCTTGTGTATTGTATTCAGACCACTCAATGCAGAATACATCTGAGGTTGC
EST: AAAGGGGGGACTGTTACTCCCCCTGAGAGGCAACATGCATCATTACCAAG ACCTTGTGTATTGTATTCAGACCACTCAATGCAGAATACATCTGAGGTTGCEST: gi|192298791|gb|FG991027.1|FG991027
genomic: AAAGGGGGGACTGTTACTCCCCCTGAGAGGCAACATGCATCATTACCAAGgtatcctaat ... gtacatgcagACCTTGTGTATTGTATTCAGACCACTCAATGCAGAATACATCTGAGGTTGC
EST: AANNNNNNNACTGTTACTCCCCCTGAGAGGCAACATGCATCATTACCAAG ACCTTGTGTATTGTATTCAGACCACTCAATGCAGAATACATCTGAGGTTGCEST: gi|58025025|gb|CX711766.1|CX711766
genomic: AAGGGGGG-ACTGTTACTCCCCCTGAGAGGCAACATGCATCATTACCAAGgtatcctaat ... gtacatgcagACCTTGTGTATTGTATTCAGACCACTCAATGCAGAATACATCTGAGGTTGC
EST: ACTGTTACTCCCCCTGAGAGGCAACATGCATCATTACCAAG ACCTTGTGTATTGTATTCAGACCACTCAATGCAGAATACATCTGAGGTTGC
genomic: ACTGTTACTCCCCCTGAGAGGCAACATGCATCATTACCAAGgtatcctaat ... gtacatgcagACCTTGTGTATTGTATTCAGACCACTCAATGCAGAATACATCTGAGGTTGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGTGGACCACTTCAAGAAACAATTTGCATATCTTGAGGAGCATTACGGCAAAGGGGGGACTGTTACTCCCCCTGAGAGGCAACATGCATCATTACCAAGgtatcctaatttctgttactattttttgaaattgttcctttcttctttttccattgttcttttatcttgtcaaattccaatatagaataacccctttatttgctttggaattgccaacttcgctgatttgttgctgtacatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG