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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGCAAAGTTGGTGAATGGAGATTTGACAAAAGGTCGCATCTACGAGGACCTCCACCAAAAAACTTGCCCCTGCCCCCACCAGGGGTTCCTGAAAGTGTGgtacgtctagaacttgcctattgatttaagagcacttcatcttatctaattggaataatatctagaaagaactgctttcattgatacatggaacttaata...

Basic information

species Glycine max
transcript GLYMA13G26610.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G26610.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G035595_T02 (Zea mays), 5'ss of exon 7
TGGCAAAGTTGGTGAATGGAGATTTGACAAAAGGTCGCATCTACGAGGACCTCCACCAAAAAACTTGCCCCTGCCCCCACCAGGGGTTCCTGAAAGTGTGgtacgtctagaacttgcctattgattt-aagagcacttcatcttatctaattggaataat--atctagaaa-gaactgctttcattgatacatggaac-ttaata
||| ||||||||||||||| ||||||||||||| ||    | |    | || ||||||| |||  |  |  ||||||| || || || || |||||||||||| || ||    | ||  ||  |||  || ||||   ||| ||   ||   || | |||  |||||  |  | | || | |  || | |  |  | | |  | |
TGGTAAAGTTGGTGAATGGCGATTTGACAAAAGATCATTCCCAGATAGGCCACCACCAAGAAATCTTACATTGCCCCCTCCTGGAGTACCAGAAAGTGTGgtaagtgta---ttagcagataaattggaaaagcatggcatgtttgtta--cggcacaatggatctattattgtattgatgtgttttaaatgttaaccatccaca

upper sequence: GLYMA13G26610.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G055020_T03 (Zea mays), 5'ss of exon 8
TGGCAAAGTTGGTGAATGGAGATTTGACAAAAGGTCGCATCTACGAGGACCTCCACCAAAAAACTTGCCCCTGCCCCCACCAGGGGTTCCTGAAAGTGTGgtacgtctagaacttgcctattgatttaagagcacttcatcttatctaattggaataatatctagaaagaactgctttcattgatacatggaacttaata-
||| ||| | ||||||||| | ||||||||||| ||  | || | |   || ||||||| |||  |  | |||||||| ||||| |||||||||||||||||| ||  |  | |       || |     | ||  |  |  | | |  ||  |  |||   | |       || ||  ||  | |    |||||   |  
TGGGAAAATCGGTGAATGGCGTTTTGACAAAAGATCTTACCTTCAATCTCCACCACCAAGAAATCTTTCACTGCCCCCTCCAGGAGTTCCTGAAAGTGTGgtatgtgcaacaatattgcgatgttagggaaacatgttgttct-tttgtttctataaatgattggtttttcatgtttatatgaaaattaagaactgtttgt