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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATCAGATGCAGATCATATTGACAGGTTGATATCATGCCTTCATATGGCACTTCCATTTGTAGTGgtaaggactgtttatactgtttatcttttctcatattgttttctgtcaagttttttcttcaacagaatcatttttttctccttgcag

Basic information

species Glycine max
transcript GLYMA13G24090.2
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G24090.2 (Glycine max), 5'ss of exon 8
lower sequence: AT1G29030.1 (Arabidopsis thaliana), 5'ss of exon 9
GTATCAGATGCAGATCATATTGACAGGTTGATATCATGCCTTCATATGGCACTTCCATTTGTAGTGgtaaggact----gtttatactgtttatc-------ttttctcatattgttttctgtcaagttttttcttcaacagaatcatttttttctccttgcag
|| |||||| ||||||||||||||||||| ||||||||||| || | ||| ||||||||  | |  ||| ||| |    | |  |||||  || |       | ||   |  |||   | | |  | |  | | |  |    |||    |  |  ||    |||
GTTTCAGATACAGATCATATTGACAGGTTTATATCATGCCTGCAAACGGCCCTTCCATTCTTTGCAgtatggaatcatagctattactgcatagcacttggatatttcaaagttgagatgttttgaatcatatatatatactaatttcgtcctcttctgaacag

upper sequence: GLYMA13G24090.2 (Glycine max), 5'ss of exon 8
lower sequence: AT2G34040.1 (Arabidopsis thaliana), 5'ss of exon 9
GTATCAGATGCAGATCATATTGACAGGTTGATATCATGCCTTCATATGGCACTTCCATTTGTAGTGgtaaggact----gtttatactgtttatcttttctcatattgttttctgtcaagttttttcttcaacagaatcatttttttctccttgcag---
 | |||||| | || |||||||||||||||||||||||||| ||  |||| ||||| ||| | | |||| | |||     |   | ||| |  |   |    | | |   || | | || ||   |  |   |  | | | |||    ||||   |    
TTTTCAGATACGGACCATATTGACAGGTTGATATCATGCCTGCAACTGGCTCTTCCCTTTTTTGCGgtatgaactcagaataagtgctgctagtagctggatagagtccattttataaacttgactggttgtcttactaactttccgttcctctgaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5752670|gb|AI959957.1|AI959957
EST:     ATATTGACAGGTTGATATCATGCCTTCATATGGCACTTCCATTTGTAGTG                         AGGGGTGCATCAAGCAACAAATTTCTCAACTATATAAACAAATATATAATA
genomic: ATATTGACAGGTTGATATCATGCCTTCATATGGCACTTCCATTTGTAGTGgtaaggactg ... ctccttgcagAGGGGTGCATCAAGCAACAAATTTCTCAACTATATAAACAAATATATAATA