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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAAGAAGAATGAGAACAAGGAAGTTGCAGTGAACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCATgtaagtagcagccatctgattcatgatcactaaaccgttttttatccattaagtaatgggtaattgatcactttaactcgtccaattttgacattttttttaaaaatgttttaaggtttcaattttaatacttctctttttattcatgcgcaagaatgatatgaagtttaaaacctttttattttgttgtgagaag

Basic information

species Glycine max
transcript GLYMA13G19500.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G19500.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os05g02310.1 (Oryza sativa), 5'ss of exon 8
ACAAGAAGAATGAGAACAAGGAAGTTGCAGTGAACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCATgtaagtagcagccatctgattcatgatcactaaaccgttttttatccattaagtaatgggtaattgatcactttaactcgtc-caattttgacattttttttaaaaatgttttaaggtttcaattttaatacttctctttttattcatgcgcaagaatgatatgaagtttaaaacctttttattttgttgtgagaag
|||||||||||||||||||||| ||||| || || ||||| || |||||    ||||| ||||| || || ||||| ||||||| ||||     ||  ||   ||| |  |||| | | |  | ||    ||  ||      | |   ||||   | |||| |  | || ||||  ||    || |                                                                                             
ACAAGAAGAATGAGAACAAGGAGGTTGCTGTCAATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCATgtgagtact--tcacttg---cataagtactacaacatactgtacatgttt-gtgtaaaatcac--atcaagctgactcttaaccatgttgatgttgccattcag--------------------------------------------------------------------------------------------

upper sequence: GLYMA13G19500.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G137930_T02 (Zea mays), 5'ss of exon 8
ACAAGAAGAATGAGAACAAGGAAGTTGCAGTGAACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCATgtaagtagcagccatctgattcatgatcactaaaccgttttttatccattaagtaatgggtaattgatcactttaactcgtccaattttgacattttttttaaaaatgttttaaggtttcaattttaatacttctctttttattcatgcgcaagaatgatatgaagtttaaaacctttttattttgttgtgagaag
|||||||||||||||||||||| ||||| ||||| |||||||| || ||    || || |||||||| ||  |||| || |||||||| | |   |||  |    || |||    | |   | |  ||  ||      |    |  | | | |        ||    || |  |||                                                                                                      
ACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGAGCGCCGCTTATGAAGCCATACAGCACTCTATgtaagttg-atttatcgcaactgtg-tcatctcaacacgtatcctcgtttcgaccttca--agctaaccgcccagcaatgtgttgttcttccatccacag------------------------------------------------------------------------------------------------

upper sequence: GLYMA13G19500.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv08s0040g02470.t01 (Vitis vinifera), 5'ss of exon 8
ACAAGAAGAATGAGAACAAGGAAGTTGCAGTGAACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCATgtaagtagcagccatctgattcatgatcactaaaccgttttttatccattaagtaatgggtaattgatcactttaactcgtccaattttgacattttttttaaaaatgttttaaggtttcaattttaatacttctctttttattcatgcgcaagaatgatatgaagtttaaaacctttttattttgttgtgagaag
||||||| ||||||||||||||||||||||| ||||||||||| ||  | ||   ||| ||||| || ||| ||||||||||||||||   |      |||| | |  || | |     || |||||   ||  |||   | |||   || ||        ||   || |   ||| |    |||| |  | |  |                                                                                  
ACAAGAAAAATGAGAACAAGGAAGTTGCAGTTAACGACTTTCTGCCATCTTCCAGTGCTTATGAGGCAATCCAGCATTCCATgtaagtgtta------tgatcctttgtctccat----ttatttatagtttgtgta--tgttaacatat-accgatgtgtgtgtgatatacgcatatagaataaaga-atataga----------------------------------------------------------------------------------

upper sequence: GLYMA13G19500.1 (Glycine max), 5'ss of exon 8
lower sequence: PP1S552_1V6.1 (Physcomitrella patens), 5'ss of exon 8
ACAAGAAGAATGAGAACAAGGAAGTTGCAGTGAACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCATgtaagtagcagccatctgattcatgatcactaaaccgttttttatccattaagtaatgggtaattgatcactttaactcgtccaattttgacattttttttaaaaatgttttaaggtttcaattttaatacttctctttttattcatgcgcaagaatgatatgaagtttaaaacctttttattttgttgtgagaag
|||||||||||||||||||||||||  | ||| |  |||| ||      |  ||||||   | |||| ||||  || ||||||||||         |||  |  |  ||  |||     | | ||       | ||  |||   || |       ||    |    | |||||   ||    |  |  || |||                                                                                    
ACAAGAAGAATGAGAACAAGGAAGTAACGGTGGATAACTTCCTGGGCCACGAAGCTGCGATTCAAGCCATCAGTCACTCCATgtaagcg------ttcttgtcgagaattcctatttgatgtgttg----agatgtgttggaagatggcatttcctatgaagatgcaatttga---ttgccatggagctgatttg-----------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58021657|gb|CX708398.1|CX708398
EST:     AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCAT                         GACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATT
genomic: AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCATgtaagtagca ... ttgtgagaagGACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATT
EST: gi|151412335|gb|EV282147.1|EV282147
EST:     AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCAT                         GACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATT
genomic: AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCATgtaagtagca ... ttgtgagaagGACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATT
EST: gi|208303442|gb|GE101246.1|GE101246
EST:     AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCAT                         GACCTTATATGCG
genomic: AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCATgtaagtagca ... ttgtgagaagGACCTTATATGCG
EST: gi|214009280|gb|DB988589.1|DB988589
EST:     AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCAT                         GACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATT
genomic: AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCATgtaagtagca ... ttgtgagaagGACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATT
EST: gi|11413818|gb|BF425829.1|BF425829
EST:     AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCAT                         GACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGG
genomic: AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCATgtaagtagca ... ttgtgagaagGACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGG
EST: gi|192308688|gb|FK000078.1|FK000078
EST:     AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCAT                         GACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATT
genomic: AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCATgtaagtagca ... ttgtgagaagGACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATT
EST: gi|192330022|gb|FK020838.1|FK020838
EST:     AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCAT                         GACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATT
genomic: AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCATgtaagtagca ... ttgtgagaagGACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATT
EST: gi|21888361|gb|BQ741574.1|BQ741574
EST:     AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCAT                         GACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATT
genomic: AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCATgtaagtagca ... ttgtgagaagGACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATT
EST: gi|31472047|gb|CD414075.1|CD414075
EST:     AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCAT                         GACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATT
genomic: AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCATgtaagtagca ... ttgtgagaagGACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATT
EST: gi|41146349|gb|CK606560.1|CK606560
EST:     AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCAT                         GACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATT
genomic: AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCATgtaagtagca ... ttgtgagaagGACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATT
EST: gi|120494697|gb|EH222864.1|EH222864
EST:     AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCAT                         GACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATT
genomic: AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCATgtaagtagca ... ttgtgagaagGACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATT
EST: gi|11413799|gb|BF425810.1|BF425810
EST:     AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCAT                         GACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATT
genomic: AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCATgtaagtagca ... ttgtgagaagGACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATT
EST: gi|14259127|gb|BG882035.1|BG882035
EST:     AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCAT                         GACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATT
genomic: AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCATgtaagtagca ... ttgtgagaagGACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATT
EST: gi|193677791|gb|FK616613.1|FK616613
EST:     AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCAT                         GACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATT
genomic: AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCATgtaagtagca ... ttgtgagaagGACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATT
EST: gi|192308689|gb|FK000079.1|FK000079
EST:     AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCAT                         GACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATT
genomic: AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCATgtaagtagca ... ttgtgagaagGACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATT
EST: gi|151410176|gb|EV279991.1|EV279991
EST:     AACGACTTCCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCAT                         GACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATT
genomic: AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCATgtaagtagca ... ttgtgagaagGACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATT
EST: gi|192309831|gb|FK002943.1|FK002943
EST:     AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCAT                         GACCTTATATGCGGAATACGTTGTGG
genomic: AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCATgtaagtagca ... ttgtgagaagGACCTTATATGCGGAATACGTTGTGG
EST: gi|151411553|gb|EV281364.1|EV281364
EST:     AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCAT                         GACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATT
genomic: AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCATgtaagtagca ... ttgtgagaagGACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATT
EST: gi|209719746|gb|BW672121.1|BW672121
EST:     AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCAT                         GACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATT
genomic: AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCATgtaagtagca ... ttgtgagaagGACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATT
EST: gi|192300349|gb|FG987866.1|FG987866
EST:     AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCAT                         GACCTTATATGCGGAATACGTTGTGGAGA-CTTGAG-CGGTAGTGTTGATT
genomic: AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCATgtaagtagca ... ttgtgagaagGACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATT
EST: gi|8283635|gb|BE021194.1|BE021194
EST:     AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCAT                         GACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGG
genomic: AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCATgtaagtagca ... ttgtgagaagGACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGG
EST: gi|120494567|gb|EH222734.1|EH222734
EST:     AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCAT                         GACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATT
genomic: AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCATgtaagtagca ... ttgtgagaagGACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATT
EST: gi|193687397|gb|FK629168.1|FK629168
EST:     AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCAT                         GACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATT
genomic: AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCATgtaagtagca ... ttgtgagaagGACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATT
EST: gi|21995044|gb|BQ786572.1|BQ786572
EST:     AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCAT                         GACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATT
genomic: AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCATgtaagtagca ... ttgtgagaagGACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATT
EST: gi|193483778|gb|FK451887.1|FK451887
EST:     AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCAT                         GACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATT
genomic: AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCATgtaagtagca ... ttgtgagaagGACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATT
EST: gi|31312299|gb|CD397502.1|CD397502
EST:     AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCAT                         GACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATT
genomic: AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCATgtaagtagca ... ttgtgagaagGACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATT
EST: gi|151396440|gb|EV266317.1|EV266317
EST:     AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCAT                         GACCTTATATGCGGAATACGTTGTGGAGAACTTGAGG
genomic: AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCATgtaagtagca ... ttgtgagaagGACCTTATATGCGGAATACGTTGTGGAGAACTTGAGG
EST: gi|8283558|gb|BE021117.1|BE021117
EST:     AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCAT                         GACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGG
genomic: AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCATgtaagtagca ... ttgtgagaagGACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGG
EST: gi|9204997|gb|BE331221.1|BE331221
EST:     AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCAT                         GACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATT
genomic: AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCATgtaagtagca ... ttgtgagaagGACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATT
EST: gi|58019190|gb|CX705932.1|CX705932
EST:     AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCAT                         GACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATT
genomic: AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCATgtaagtagca ... ttgtgagaagGACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATT
EST: gi|58023065|gb|CX709806.1|CX709806
EST:     AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCAT                         GACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATT
genomic: AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCATgtaagtagca ... ttgtgagaagGACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATT
EST: gi|193694539|gb|FK628591.1|FK628591
EST:     AACGACTTTCTTCCCGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCAT                         GACCTTATATGCGGAATACGTTGTGGAGAACT
genomic: AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCATgtaagtagca ... ttgtgagaagGACCTTATATGCGGAATACGTTGTGGAGAACT
EST: gi|193687651|gb|FK628246.1|FK628246
EST:     AACGACTTTCTTCCCGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCAT                         GAACCTTATATGCGGAATACGTTGTGGAGAACT
genomic: AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCATgtaagtagca ... ttgtgagaagGA-CCTTATATGCGGAATACGTTGTGGAGAACT
EST: gi|192309832|gb|FK002944.1|FK002944
EST:     AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCAT                         GACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATT
genomic: AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCATgtaagtagca ... ttgtgagaagGACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATT
EST: gi|209701983|gb|BW664583.1|BW664583
EST:     AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCAT                         GACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATT
genomic: AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCATgtaagtagca ... ttgtgagaagGACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATT
EST: gi|8401707|gb|BE057341.1|BE057341
EST:     AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCAT                         GACCTTATATGCAGAATACATTGTGGAGAACTTGAGGCGGTAGTGTTAATT
genomic: AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCATgtaagtagca ... ttgtgagaagGACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATT
EST: gi|151394138|gb|EV264009.1|EV264009
EST:     AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCAT                         GACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATT
genomic: AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCATgtaagtagca ... ttgtgagaagGACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACAAGAAGAATGAGAACAAGGAAGTTGCAGTGAACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCATgtaagtagcagccatctgattcatgatcactaaaccgttttttatccattaagtaatgggtaattgatcactttaactcgtccaattttgacattttttttaaaaatgttttaaggtttcaattttaatacttctctttttattcatgcgcaagaatgatatgaagtttaaaacctttttattttgttgtgagaag

- - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGC