Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGCCCAAAGTGCTATAAATGATTTGACTGgtaagataaacgcattttctaaatgctagtttttcatttttagcatgcttcacgtgatgtatgaatgaatgttgtgaagtatatatatgatgatcgaatc...

Basic information

species Glycine max
transcript GLYMA13G17200.2
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13562965|gb|BG551185.1|BG551185
EST:     CCAAAGTGCTATAAATGATTTGACTG                         GAAAA-GGCTTGGAAGTAGACAGATTCGTTGTAATTGGGCAACCAAAGGGG
genomic: CCAAAGTGCTATAAATGATTTGACTGgtaagataaa ... aacacttcagGAAAATGGCTTGGAAGTAGACAGATTCGTTGTAATTGGGCAACCAAAGGGG
EST: gi|193400330|gb|FK367929.1|FK367929
EST:     GATGCCCAAAGTGCTATAAATGATTTGACTG                         GAAAATGGCTTGGAAGTAGACAGATTCGTTGTAATTGGGCAACCAAAGGGG
genomic: GATGCCCAAAGTGCTATAAATGATTTGACTGgtaagataaa ... aacacttcagGAAAATGGCTTGGAAGTAGACAGATTCGTTGTAATTGGGCAACCAAAGGGG
EST: gi|193440423|gb|FK407172.1|FK407172
EST:     GATGCCCAAAGTGCTATAAATGATTTGACTG                         GAAAATGGCTTGGAAGTAGACAGA
genomic: GATGCCCAAAGTGCTATAAATGATTTGACTGgtaagataaa ... aacacttcagGAAAATGGCTTGGAAGTAGACAGA
EST: gi|208226527|gb|GE028192.1|GE028192
EST:     GATGCCCAAAGTGCTATAAATGATTTGACTG                         GAAAATGGCTTGGAAGTAGACAGATTCGTTGTAATTGGGCAACCAAAGGGG
genomic: GATGCCCAAAGTGCTATAAATGATTTGACTGgtaagataaa ... aacacttcagGAAAATGGCTTGGAAGTAGACAGATTCGTTGTAATTGGGCAACCAAAGGGG
EST: gi|193618203|gb|FK570745.1|FK570745
EST:     ATCAGCAGGATGCCCAAAGTGCTATAAATGATTTGACTG                         GAAAATGGCTTGGAAGTAGACAGATTCGTTGTAATTGGGCAACCAAAGGGG
genomic: ATCAGCAGGATGCCCAAAGTGCTATAAATGATTTGACTGgtaagataaa ... aacacttcagGAAAATGGCTTGGAAGTAGACAGATTCGTTGTAATTGGGCAACCAAAGGGG
EST: gi|193402169|gb|FK370216.1|FK370216
EST:     GATGCCCAAAGTGCTATAAATGATTTGACTG                         GAAAATGGCTTGGAAGTAGACAGATTCGTTGTAATTGGGCAACCAAAGGGG
genomic: GATGCCCAAAGTGCTATAAATGATTTGACTGgtaagataaa ... aacacttcagGAAAATGGCTTGGAAGTAGACAGATTCGTTGTAATTGGGCAACCAAAGGGG
EST: gi|208294750|gb|GE093869.1|GE093869
EST:     GATGCCCAAAGTGCTATAAATGATTTGACTG                         GAAAATGGCTTGGAAGTAGACAGATTCGTTGTAATTGGGCAACCAAAGGGG
genomic: GATGCCCAAAGTGCTATAAATGATTTGACTGgtaagataaa ... aacacttcagGAAAATGGCTTGGAAGTAGACAGATTCGTTGTAATTGGGCAACCAAAGGGG
EST: gi|208140082|gb|GD936902.1|GD936902
EST:     GATGCCCAAAGTGCTATAAATGATTTGACTG                         GAAAATGGCTTGGAAGTAGACAGATTCGTTGTAATTGGGCAACCAAAGGGG
genomic: GATGCCCAAAGTGCTATAAATGATTTGACTGgtaagataaa ... aacacttcagGAAAATGGCTTGGAAGTAGACAGATTCGTTGTAATTGGGCAACCAAAGGGG
EST: gi|208196836|gb|GD995831.1|GD995831
EST:     GATGCCCAAAGTGCTATAAATGATTTGACTG                         GAAAATGGCTTGGAAGTAGACAGATTCGTTGTAATTGGGCAACCAAAGGGG
genomic: GATGCCCAAAGTGCTATAAATGATTTGACTGgtaagataaa ... aacacttcagGAAAATGGCTTGGAAGTAGACAGATTCGTTGTAATTGGGCAACCAAAGGGG
EST: gi|207826074|gb|GD799815.1|GD799815
EST:     GTATTGCCCTAAAGTGCTATAAATGATTTGACTG                         GAAAATGGCTTGGAAGTAGACAGATTCGTTGTAATTGGGCAACCAAAGGGG
genomic: G-A-TGCCC-AAAGTGCTATAAATGATTTGACTGgtaagataaa ... aacacttcagGAAAATGGCTTGGAAGTAGACAGATTCGTTGTAATTGGGCAACCAAAGGGG
EST: gi|193625489|gb|FK577477.1|FK577477
EST:     GATGCCCAAAGTGCTATAAATGATTTGACTG                         GAAAATGGCTTGGAAGTAGACAGATTCGTTGTAATTGGGCAACCAAAGGGG
genomic: GATGCCCAAAGTGCTATAAATGATTTGACTGgtaagataaa ... aacacttcagGAAAATGGCTTGGAAGTAGACAGATTCGTTGTAATTGGGCAACCAAAGGGG
EST: gi|193377660|gb|FK341436.1|FK341436
EST:     GATGCCCAAAGTGCTATAAATGATTTGACTG                         GAAAATGGCTTGGAAGTAGACAGATTCGTTGTAATTGGGCAACCAAAGGGG
genomic: GATGCCCAAAGTGCTATAAATGATTTGACTGgtaagataaa ... aacacttcagGAAAATGGCTTGGAAGTAGACAGATTCGTTGTAATTGGGCAACCAAAGGGG
EST: gi|151407111|gb|EV276926.1|EV276926
EST:     CCAAAGTGCTATAAATGATTTGACTG                         GAAAATGGCTTGGAAGTAGACAGATTCGTTGTAATTGGGCAACCAAAGGGG
genomic: CCAAAGTGCTATAAATGATTTGACTGgtaagataaa ... aacacttcagGAAAATGGCTTGGAAGTAGACAGATTCGTTGTAATTGGGCAACCAAAGGGG
EST: gi|193365227|gb|FK331468.1|FK331468
EST:     TGCCCAAAGTGCTATAAATGATTTGACTG                         GAAAATGGCTTGGAAGTAGACAGATTCGTTGTAATTGGGGCAACCAAAGGG
genomic: TGCCCAAAGTGCTATAAATGATTTGACTGgtaagataaa ... aacacttcagGAAAATGGCTTGGAAGTAGACAGATTCGTTGTAATT-GGGCAACCAAAGGG
EST: gi|42723064|gb|CK768963.1|CK768963
EST:     GATGCCCAAAGTGCTATAAATGATTTGACTG                         GAAAATGGCTTGGAAGTAGACAGATTCGTTGTAATTGGGCAACCAAAGGGG
genomic: GATGCCCAAAGTGCTATAAATGATTTGACTGgtaagataaa ... aacacttcagGAAAATGGCTTGGAAGTAGACAGATTCGTTGTAATTGGGCAACCAAAGGGG