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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAAGAAACTGAATCTTCCTGTTCTTCCAACAACTACAATTGGATCTTTCCCTCAAACTGCCGATCTTAGAAGAGTTCGCCGTGAATTCAAGGCTAACAAgtgagtatgaagtcttcatcttctgtcaccttccaaatccaatgattattacagttcgacatataaactgctatatgtttactatgtgaatag

Basic information

species Glycine max
transcript GLYMA13G15140.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G15140.2 (Glycine max), 5'ss of exon 8
lower sequence: AT5G20980.2 (Arabidopsis thaliana), 5'ss of exon 8
AGAAGAAACTGAATCTTCCTGTTCTTCCAACAACTACAATTGGATCTTTCCCTCAAACTGCCGATCTTAGAAGAGTTCGCCGTGAATTCAAGGCTAACAAgtgagtatgaagtcttcatcttctgtcaccttccaaatccaatgattattacagttcgacatataaactgctatatgtttactatgtgaatag
||||||| || || ||||||| ||||||||||||||||||||||||||| ||||| ||  | ||||| ||| |  | ||| | ||||||||||| || ||||  |  |       | |||   ||     |   ||||      ||| | |||  ||   |||||||     || | |   ||   |    ||
AGAAGAAGCTTAACCTTCCTGCTCTTCCAACAACTACAATTGGATCTTTTCCTCAGACCACAGATCTCAGACGGATACGCAGGGAATTCAAGGCCAAAAAgtaggccta----tctaatccagtgatgtatctgaaat------attctaacatatcattatataaatactgatgtatacgctgcatttgcag

upper sequence: GLYMA13G15140.2 (Glycine max), 5'ss of exon 8
lower sequence: Vv06s0009g01080.t01 (Vitis vinifera), 5'ss of exon 8
AGAAGAAACTGAATCTTCCTGTTCTTCCAACAACTACAATTGGATCTTTCCCTCAAACTGCCGATCTTAGAAGAGTTCGCCGTGAATTCAAGGCTAACAAgtgagtatgaagtcttcatcttctgtcaccttccaaatccaatgattat-tacagttcgacatataaactgctatatgtttactatgtgaatag
||||||| |||   ||||| || ||||| || || || ||||||||||||||||| ||    ||||||||||||||||||||||| ||||||||||| ||||||| ||      |  ||     ||      || ||  || || || | |          ||   | ||   |||| | | || | |  | ||
AGAAGAAGCTGGGCCTTCCAGTCCTTCCCACTACAACTATTGGATCTTTCCCTCAGACCATGGATCTTAGAAGAGTTCGCCGTGAGTTCAAGGCTAAGAAgtgagcattctacttctatagatagtatttcccccaaatcactgcttctgtctgaccttttatcacatctatgatatttatgctct-tttacag

upper sequence: GLYMA13G15140.2 (Glycine max), 5'ss of exon 8
lower sequence: EFJ28889 (Selaginella moellendorffii), 5'ss of exon 7
AGAAGAAACTGAATCTTCCTGTTCTTCCAACAACTACAATTGGATCTTTCCCTCAAACTGCCGATCTTAGAAGAGTTCGCCGTGAATTCAAGGCTAACAAgtgagtatgaagtcttcatcttctgtc-accttccaaatccaatgattattacagttcgacatataaactgctatatgtttactatgtgaatag
| ||| |  | || |||||| |||| ||||||||||||||||||||||||||||| || || || ||  |  |||| || |||||  | |||   || |||| |||    | | ||   |     || | |||    ||||    ||   |    |  |                                   
AAAAGCACTTAAAGCTTCCTATTCTGCCAACAACTACAATTGGATCTTTCCCTCAGACAGCTGACCTGCGCCGAGTGCGACGTGATGTGAAGAGCAAGAAgtaagtgaagacttttagacaggattctatcttatgcatccgtgcatccgtgtgatcag-----------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193495917|gb|FK461913.1|FK461913
EST:     CCTCAAACTGCCGATCTTAGAAGAGTTCGCCGTGAATTCAAGGCTAACAA                         GATCTCCGAGGAAGATTATATCCATTT
genomic: CCTCAAACTGCCGATCTTAGAAGAGTTCGCCGTGAATTCAAGGCTAACAAgtgagtatga ... atgtgaatagGATCTCCGAGGAAGATTATATCCATTT
EST: gi|193513398|gb|FK471506.1|FK471506
EST:     CCTCAAACTGCCGATCTTAGAAGAGTTCGCCGTGAATTCAAGGCTAACAA                         GATCTCCGAGGAAGATTATATCCATTTCATTAAGGAGGAAATTAACAATGT
genomic: CCTCAAACTGCCGATCTTAGAAGAGTTCGCCGTGAATTCAAGGCTAACAAgtgagtatga ... atgtgaatagGATCTCCGAGGAAGATTATATCCATTTCATTAAGGAGGAAATTAACAATGT
EST: gi|193364784|gb|FK330493.1|FK330493
EST:     CTTAGAAGAGTTCGCCGTGAATTCAAGGCTAACAA                         GATCTCCGAGGAAGATTATATCCATTTCATTAAGGAGGAAATTAACAATGT
genomic: CTTAGAAGAGTTCGCCGTGAATTCAAGGCTAACAAgtgagtatga ... atgtgaatagGATCTCCGAGGAAGATTATATCCATTTCATTAAGGAGGAAATTAACAATGT
EST: gi|23052986|gb|BU577477.1|BU577477
EST:     CCTTAT-CTGCCGATCTTAGAAGAGTTCGCCGTGAATTCAAGGCTAACAA                         GATCTCCGAGGAAGATTATATCCATTTCATTAAGGAGGAAATTAACAATGT
genomic: CCTCAAACTGCCGATCTTAGAAGAGTTCGCCGTGAATTCAAGGCTAACAAgtgagtatga ... atgtgaatagGATCTCCGAGGAAGATTATATCCATTTCATTAAGGAGGAAATTAACAATGT
EST: gi|207754554|gb|GD728267.1|GD728267
EST:     CCTCAAACTGCCGATCTTAGAAGAGTTCGCCGTGAATTCAAGGCTAACAA                         GATCTCCGAGGAA
genomic: CCTCAAACTGCCGATCTTAGAAGAGTTCGCCGTGAATTCAAGGCTAACAAgtgagtatga ... atgtgaatagGATCTCCGAGGAA
EST: gi|151393115|gb|EV262990.1|EV262990
EST:     CCTCAAACTGCCGATCTTAGAAGAGTTCGCCGTGAATTCAAGGCTAACAA                         GATCTCCGAGGAAGATTATATCCATTTCATTAGGGAGGAAATTAACAATGT
genomic: CCTCAAACTGCCGATCTTAGAAGAGTTCGCCGTGAATTCAAGGCTAACAAgtgagtatga ... atgtgaatagGATCTCCGAGGAAGATTATATCCATTTCATTAAGGAGGAAATTAACAATGT
EST: gi|193563489|gb|FK521378.1|FK521378
EST:     CCTCAAACTGCCGATCTTAGAAGAGTTCGCCGTGAATTCAAGGCTAACAA                         GATCTCCGAGGAAGATTATATCCATTTCATTAAGGAGGAAATTAACAATGT
genomic: CCTCAAACTGCCGATCTTAGAAGAGTTCGCCGTGAATTCAAGGCTAACAAgtgagtatga ... atgtgaatagGATCTCCGAGGAAGATTATATCCATTTCATTAAGGAGGAAATTAACAATGT