1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GGTACTGTAACATACTATTTGTTATTGGACAACCGGTTTCGTGTTTCTAGTGGTTATCTTGGAGCTGAATTTCAAGAGACAATGgtgtgtttgtttttcctttaatcgtgtaacatttcattagttgtctgtctttattgaagtgatttagtcatttaatttatctaatagtttataagacaca...
species | Glycine max |
transcript | GLYMA13G05700.2 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: GGTTTCGTGTTTCTAGTGGTTATCTTGGAGCTGAATTTCAAGAGACAATG GATTCTGGTTTTAACCGTATGCATTCCGGCGAAGTTGCTTCTCCAGTTGTTEST: gi|208218482|gb|GE020490.1|GE020490
genomic: GGTTTCGTGTTTCTAGTGGTTATCTTGGAGCTGAATTTCAAGAGACAATGgtgtgtttgt ... gactgcatagGATTCTGGTTTTAACCGTATGCATTCCGGCGAAGTTGCTTCTCCAGTTGTT
EST: GGTTTCGTGTTTCGAGTGGTTATCTTGGAGCTGAATTTCAAGAGACAATG GATTCTGGTTTTAACCGTATGCATTCCGGCGAAGTTGCTTCTCCAGTTGTTEST: gi|193323651|gb|FK290503.1|FK290503
genomic: GGTTTCGTGTTTCTAGTGGTTATCTTGGAGCTGAATTTCAAGAGACAATGgtgtgtttgt ... gactgcatagGATTCTGGTTTTAACCGTATGCATTCCGGCGAAGTTGCTTCTCCAGTTGTT
EST: GGTTTCGTGTTTCTAGTGGTTATCTTGGAGCTGAATTTCAAGAGACAATG GATTCTGGTTTTAACCGTATGCATTCCGGCGAAGTTGCTTCTCCAGTTGTTEST: gi|22540977|gb|BU090820.1|BU090820
genomic: GGTTTCGTGTTTCTAGTGGTTATCTTGGAGCTGAATTTCAAGAGACAATGgtgtgtttgt ... gactgcatagGATTCTGGTTTTAACCGTATGCATTCCGGCGAAGTTGCTTCTCCAGTTGTT
EST: GGTTTCGTGTTTCTAGTGGTTATCTTGGAGCTGAATTTCAAGAGACAATG GATTCTGGTTTTAACCGTATGCATTCCGGCGAAGTTGCTTCTCCAGTTGTTEST: gi|193621277|gb|FK566803.1|FK566803
genomic: GGTTTCGTGTTTCTAGTGGTTATCTTGGAGCTGAATTTCAAGAGACAATGgtgtgtttgt ... gactgcatagGATTCTGGTTTTAACCGTATGCATTCCGGCGAAGTTGCTTCTCCAGTTGTT
EST: GTTTCGTGTTTCTAGTGGTTATCTTGGAGCTGAATTTCAAGAGACAATAG GATTCTGGTTTTAACCGTAEST: gi|208219813|gb|GE018937.1|GE018937
genomic: GTTTCGTGTTTCTAGTGGTTATCTTGGAGCTGAATTTCAAGAGACAAT-Ggtgtgtttgt ... gactgcatagGATTCTGGTTTTAACCGTA
EST: GGTTTCGTGTTTCGAGTGGTTATCTTGGAGCTGAATTTCAAGAGACAATG GATTCTGGTTTTAACCGTATGCATTCCGGCGAAGTTGCTTCTCCAGTTGTT
genomic: GGTTTCGTGTTTCTAGTGGTTATCTTGGAGCTGAATTTCAAGAGACAATGgtgtgtttgt ... gactgcatagGATTCTGGTTTTAACCGTATGCATTCCGGCGAAGTTGCTTCTCCAGTTGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTACTGTAACATACTATTTGTTATTGGACAACCGGTTTCGTGTTTCTAGTGGTTATCTTGGAGCTGAATTTCAAGAGACAATGgtgtgtttgtttttcctttaatcgtgtaacatttcattagttgtctgtctttattgaagtgatttagtcatttaatttatctaatagtttataagacaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA