Sequence
atgc intronic sequence ATGC exonic sequenceCAATAGGTCCAGTGAATTTCACCCAGAAGTGAGAAGAGTGAGGCGTGAAGGATCCTATATTTATGAGGAATTTATGCCAACTGGAGGGACAGATGTTAAGgtttggctgttttgagatttataatgctttctatttttttttctcttaaatgtatttggaatgtttgtccatatcctttagcatattagaatggtctcttagaattttcataaatgacttag
Basic information
species | Glycine max |
transcript | GLYMA13G05060.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA13G05060.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os03g48300.1 (Oryza sativa), 5'ss of exon 8
CAATAGGTCCAGTGAATTTCACCCAGAAGTGAGAAGAGTGAGGCGTGAAGGATCCTATATTTATGAGGAATTTATGCCAACTGGAGGGACAGATGTTAAGgtttggctgttttgagatttataatgctttctatttttttttctcttaaatgtatttggaatgtttgtccatatcctttagcatattagaatggtctcttagaattttcataaatgacttag
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TAACCGATCTAGTGAATTTCATCCTGATGTCAGGAGAGTGAGGCGTGAAGGATCTTACATTTACGAGGAGTTCATGCCTACTGGTGGGACGGATGTTAAAgtaagaaaacttt------tgcaa-gtgttctgttcttttagttgggcaa-gtgttctgtttcaactgctgtacactgaaaaatagcatattagtttc-----actttaatgg---------
upper sequence: GLYMA13G05060.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv14s0066g02540.t01 (Vitis vinifera), 5'ss of exon 8
CAATAGGTCCAGTGAATTTCACCCAGAAGTGAGAAGAGTGAGGCGTGAAGGATCCTATATTTATGAGGAATTTATGCCAACTGGAGGGACAGATGTTAAGgtttggctgttttgagatttataatgctttctatttttttttctcttaaatgtatttggaatgtttgtccatatcctttagcatattagaatggtctcttagaattttcataaatgacttag
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TAACCGCTCAAGTGAGTTCCATCCAGAGGTTAGAAGAGTGAGGCGTGAAGGCTCTTATATATATGAGGAATTTATGCCAACTGGAGGAACAGATGTCAAGgtt-gtctagttt---attgattatatttcttggtgaataaaatct-gtgctcgttttgatcatattaatggatgagctagctgcacagtttgctctgttgagat-----------------
upper sequence: GLYMA13G05060.1 (Glycine max), 5'ss of exon 8
lower sequence: EFJ07403 (Selaginella moellendorffii), 5'ss of exon 8
CAATAGGTCCAGTGAATTTCACCCAGAAGTGAGAAGAGTGAGGCGTGAAGGATCCTATATTTATGAGGAATTTATGCCAACTGGAGGGACAGATGTTAAGgtttggctgttttgagatttataatgctttctatttttttttctcttaaatgtatttggaatgtttgtccatatcctttagcatattagaatggtctcttagaattttcataaatgacttag
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AAATCGTTCAAGTGAGTTTCATCCCGAGATAAGACGAGTTCGAAGAGAAGGCTCTTATATCTATGAGGAGTTTATGCCAACTGGGGGAACAGATGTCAAGgta-gacaactc---aacttcttgttcttagcagtcgcctct-tctgaactgcag-------------------------------------------------------------------
upper sequence: GLYMA13G05060.1 (Glycine max), 5'ss of exon 8
lower sequence: EFJ19878 (Selaginella moellendorffii), 5'ss of exon 8
CAATAGGTCCAGTGAATTTCACCCAGAAGTGAGAAGAGTGAGGCGTGAAGGATCCTATATTTATGAGGAATTTATGCCAACTGGAGGGACAGATGTTAAGgtttggctgttttgagatttataatgctttctatttttttttctcttaaatgtatttggaatgtttgtccatatcctttagcatattagaatggtctcttagaattttcataaatgacttag
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AAATCGTTCAAGTGAGTTTCATCCCGAGATAAGACGAGTTCGAAGAGAAGGCTCTTATATCTATGAGGAGTTTATGCCAACTGGGGGAACAGATGTCAAGgta-gacaactc---aacttcttgttcttagcagccgcctct-tctgaactgcag-------------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|207836474|gb|GD805687.1|GD805687EST: GATCCTATATTTATGAGGAATTTATGCCTACTGGAGGGACAGATGTTAAG GTGTATACAGTAGGTCCTGAATATGCGCACGACTGAGGCAAGGAA
genomic: GATCCTATATTTATGAGGAATTTATGCCAACTGGAGGGACAGATGTTAAGgtttggctgt ... aatgacttagGTGTATACAGTAGGTCCTGAATATGCGCATG-CTGAGGCAAGGAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CAATAGGTCCAGTGAATTTCACCCAGAAGTGAGAAGAGTGAGGCGTGAAGGATCCTATATTTATGAGGAATTTATGCCAACTGGAGGGACAGATGTTAAGgtttggctgttttgagatttataatgctttctatttttttttctcttaaatgtatttggaatgtttgtccatatcctttagcatattagaatggtctcttagaattttcataaatgacttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG