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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTACTTGCAACAACCCTTGCTCGTCACCGTTCAAAACCAAGGATCTACATTGGATGTATGAAATCTGGACCTGTTCTTTCTCGAAGgtaattccatgggacttgtattttagaatgaggccattccctatcagttctcttcattgtgactttgtagttatctgatcttgtttcttattgtag

Basic information

species Glycine max
transcript GLYMA13G02420.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G02420.1 (Glycine max), 5'ss of exon 8
lower sequence: EFJ10043 (Selaginella moellendorffii), 5'ss of exon 8
GTGTACTTGCAACAACCCTTGCTCGTCACCGTTCAAAACCAAGGATCTACATTGGATGTATGAAATCTGGACCTGTTCTTTCTCGAAGgtaattccatgggacttgtattttagaatgaggccattccctatcagttctcttcattgtgactttgtagttatctgatcttgtttcttattgtag
|  | ||  |    || || ||||| ||  | || || ||  |   |||||||||||||||||| ||||||||||| ||  ||| || ||||      | |   |||      |||||   | |  | | |  ||||        ||||| | |  ||                          
GCATGCTCACTGTCACTCTGGCTCGGCATAGATCCAAGCCTCGCGCCTACATTGGATGTATGAAGTCTGGACCTGTCCTGGCTCAAAAgtaa------gagctctgttaccgtgaatg---ctaagctcca--agtt--------tgtgattattcag--------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151401991|gb|EV271804.1|EV271804
EST:     CCAAGGATCTACATTGGATGTATGAAATCTGGACCTGTTCTTTCTCGAAG                         GGATGTCAAGTATCATGAACCTGAGTTTTGGAAATTTGGAGAAGGGGGGAA
genomic: CCAAGGATCTACATTGGATGTATGAAATCTGGACCTGTTCTTTCTCGAAGgtaattccat ... cttattgtagGGATGTCAAGTATCATGAACCTGAGTTTTGGAAATTTGGAGAAGAGGGGAA