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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATGGATGCCCAAGTGGCTTATGGCTTCCATCATCTACGCAATGAAAAACCTTACCTTGCTAGTGGTCCAATTTCAAATAAGgtatctatggagctgtggaatgtgttttataaattaccttcttgcttgctttcttcagtttacttaatttgatgttacagttcttagaaggtaatctata...

Basic information

species Glycine max
transcript GLYMA13G01360.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G01360.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os08g15090.1 (Oryza sativa), 5'ss of exon 9
GAATGGATGCCCAAGTGGCTTATGGCTTCCATCATCTACGCAATGAAAAACCTTACCTTGCTAGTGGTCCAATTTCAAATAAGgtatctatggagctgtggaatgtgttttataaattaccttcttgc--ttgctttcttcagtttacttaatttgatgttaca-gttcttagaaggtaatctata
| |||||||| |||||||| ||||| || || ||||||||  ||||||| || | |||||||||||||||  | || ||||||||||  |   ||   ||  || |   | ||  ||  |  |        | ||     ||   | || |  ||||  |  || || || |  |  |        
GTATGGATGCTCAAGTGGCGTATGGATTTCACCATCTACGGGATGAAAAGCCATTCCTTGCTAGTGGTCCTTTATCTAATAAGgtatgcactcagggatgagatttccatcatttatggcaattcaaaagcttctcagcccaaactcctgatattgaattagcatgtgctcattatctgtctc---

upper sequence: GLYMA13G01360.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv11s0052g01840.t01 (Vitis vinifera), 5'ss of exon 7
GAATGGATGCCCAAGTGGCTTATGGCTTCCATCATCTACGCAATGAAAAACCTTACCTTGCTAGTGGTCCAATTTCAAATAAGgtatctatggagctgtggaatgtgtt---ttataaattaccttcttgcttgctttcttcagtttacttaatttgat----gttacagttcttagaaggtaatctata
| |||||||||||||| || |||||||| |||||| |||| ||||||| ||||||||||||    |||||||||||||||||||| |   | || || |  | | | ||   || || |  |  ||| |  || | ||  | | |  ||| || | |      ||||   ||  ||||    | |     
GCATGGATGCCCAAGTTGCCTATGGCTTTCATCATTTACGGAATGAAAGACCTTACCTTGCACAAGGTCCAATTTCAAATAAGgtctgattcgatctctttacttttttgagttttataccatgttcgtaatttccttact-aatgcactcaactcgggaagagttatgatt--tagattacagtt----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192332064|gb|FK026344.1|FK026344
EST:     ATCTACGCAATGAAAAACCTTACCTTGCTAGTGGTCCAATTTCAAATAAG                         ATTATATACTCGGGTTACAGTTGCACACAGGGCTGGTTTTTCACACCTTGC
genomic: ATCTACGCAATGAAAAACCTTACCTTGCTAGTGGTCCAATTTCAAATAAGgtatctatgg ... ttggttgcagATTATATACTCGGGTTACAGTTGCACACAGGGCTGGTTTTTCACACCTTGC
EST: gi|302141303|gb|HO212179.1|HO212179
EST:     ATCTACGCAATGAAAAACCTTACCTTGCAAGTGGTCCAATTTCAAATAAG                         ATTATATACTCGGGTTACAGTTGCACACAGGGCTGGTTTTTCACACCTTGC
genomic: ATCTACGCAATGAAAAACCTTACCTTGCTAGTGGTCCAATTTCAAATAAGgtatctatgg ... ttggttgcagATTATATACTCGGGTTACAGTTGCACACAGGGCTGGTTTTTCACACCTTGC