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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGATTATGGTAGTGGTTTAGATCATCAACTGCAACTGCCGGCACTTCCCGTGTCTGTTCCTTCTGAGCAGCAAATCAATTCAGGGATGCCTGTTGGAGgtaagcattaccatttccttgaactctgatttgatggatgtctctccccaccccaccccatctctcttttcatttgggctggggtggtcagattcagtta...

Basic information

species Glycine max
transcript GLYMA13G01160.1
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193500680|gb|FK464477.1|FK464477
EST:     CGTGTCTGTTCCTTCTGAGCAGCAAATCAATTCAGGGATGCCTGTTGGAG                         GTTATAATGATAATAATATAGTAATACGATATCCAACCCAGTCATTGATTC
genomic: CGTGTCTGTTCCTTCTGAGCAGCAAATCAATTCAGGGATGCCTGTTGGAGgtaagcatta ... cccttttcagGTTATAATGATAATAATATAGTAATACGATATCCAACCCAGTCATTGATTC
EST: gi|9986937|gb|BE661045.1|BE661045
EST:     CGTGTCTGTTCCTTCTGAGCAGCAAATCAATTCAGGGATGCCTGTTGGAG                         GTTATAATGATAATAATATAGTAATACGATATCCAACCCAGTCATTGATTC
genomic: CGTGTCTGTTCCTTCTGAGCAGCAAATCAATTCAGGGATGCCTGTTGGAGgtaagcatta ... cccttttcagGTTATAATGATAATAATATAGTAATACGATATCCAACCCAGTCATTGATTC
EST: gi|9820715|gb|BE556225.1|BE556225
EST:     ATCAATTCAGGGATGCCTGTTGGAG                         GTTATAATGATAATAATATAGTAATACGATATCCAACCCAGTCATTGATTC
genomic: ATCAATTCAGGGATGCCTGTTGGAGgtaagcatta ... cccttttcagGTTATAATGATAATAATATAGTAATACGATATCCAACCCAGTCATTGATTC
EST: gi|207771104|gb|GD743867.1|GD743867
EST:     CGTGTCTGTTCCTTCTGAGCAGCAAATCAATTCAGGGATGCCTGTTGGAG                         GTTATAATGATAATAATATAGTAATACGATATCCAACCCAGTCATTGATTC
genomic: CGTGTCTGTTCCTTCTGAGCAGCAAATCAATTCAGGGATGCCTGTTGGAGgtaagcatta ... cccttttcagGTTATAATGATAATAATATAGTAATACGATATCCAACCCAGTCATTGATTC
EST: gi|208322957|gb|GE118714.1|GE118714
EST:     CGTGTCTGTTCCTTCTGAGCAGCAAATCAATTCAGGGATGCCTGTTGGAG                         GTTATAATGATAATAATATAGTAACACGATATCCAACCCAGTCATTGATTC
genomic: CGTGTCTGTTCCTTCTGAGCAGCAAATCAATTCAGGGATGCCTGTTGGAGgtaagcatta ... cccttttcagGTTATAATGATAATAATATAGTAATACGATATCCAACCCAGTCATTGATTC
EST: gi|23732300|gb|BU764310.1|BU764310
EST:     CGTGTCTGTTCCTTCTGAGCAGCAAATCAATTCAGGGATGCCTGTTGGAG                         GTTATAATGATAATAATATAGTAATACGATATCCAACCCAGTCATTGATTC
genomic: CGTGTCTGTTCCTTCTGAGCAGCAAATCAATTCAGGGATGCCTGTTGGAGgtaagcatta ... cccttttcagGTTATAATGATAATAATATAGTAATACGATATCCAACCCAGTCATTGATTC
EST: gi|23732335|gb|BU764327.1|BU764327
EST:     CGTGTCTGTTCCTTCTGAGCAGCAAATCAATTCAGGGATGCCTGTTGGAG                         GTTATAATGATAATAATATAGTAATACGATATCCAACCCAGTCATTGATTC
genomic: CGTGTCTGTTCCTTCTGAGCAGCAAATCAATTCAGGGATGCCTGTTGGAGgtaagcatta ... cccttttcagGTTATAATGATAATAATATAGTAATACGATATCCAACCCAGTCATTGATTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATTGATTATGGTAGTGGTTTAGATCATCAACTGCAACTGCCGGCACTTCCCGTGTCTGTTCCTTCTGAGCAGCAAATCAATTCAGGGATGCCTGTTGGAGgtaagcattaccatttccttgaactctgatttgatggatgtctctccccaccccaccccatctctcttttcatttgggctggggtggtcagattcagtta

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cccaccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggggtgg