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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCCTTCCACCACTTTGTGCAGAGCTTAGGAATGTGGTGATACAGCCAATGATTTTACCAATGGTTCTAACCATTGCAGAGTCTCAGgtactaatatctctttcttttcttcacttccatagaatacctaaattagtgctcgtgctgacggcattgtaattaaaaatcaatattgcaccaagaaata...

Basic information

species Glycine max
transcript GLYMA12G37070.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G37070.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G061681_T02 (Zea mays), 5'ss of exon 8
GTCCTTCCACCACTTTGTGCAGAGCTTAGGAATGTGGTGATACAGCCAATGATTTTACCAATGGTTCTAACCATTGCAGAGTCTCAGgt----actaatatctctttcttttcttcacttccatagaatacctaaattagtgctcgtgctgacggcattgtaattaaaaatcaatatt-gcaccaagaaata
|| ||||| || |||||||| ||| |  | ||  |||| || |||||||||||||| || ||||||||||| || ||||| ||||||||     ||    | |||   || | | |||||  ||  |  |    | ||  |   | | |  |   |||| |    ||     | ||||    |  ||     
GTTCTTCCTCCTCTTTGTGCTGAGTTACGCAACATGGTTATGCAGCCAATGATTTTGCCTATGGTTCTAACAATAGCAGAATCTCAGgttatttctgtggtttctcatttgtatccactttaatgaatgaatagagtttctatgcattcaaagaacattatgg--aatcccgagtatttattcttagcg---

upper sequence: GLYMA12G37070.1 (Glycine max), 5'ss of exon 8
lower sequence: AT1G71410.1 (Arabidopsis thaliana), 5'ss of exon 8
GTCCTTCCACCACTTTGTGCAGAGCTTAGGAATGTGGTGATACAGCCAATGATTTTACCAATGGTTCTAACCATTGCAGAGTCTCAGgtactaatatctctttcttttcttcacttccat---agaatacctaaattagtgctcgtgctgacggcattgtaattaaaaatcaatattgcaccaagaaata
|| |||||||| |||||||| || ||||||||| | ||  | || ||||| || || |||||||||||||| || ||| ||||||||||| |  ||  |  |          | ||  ||     ||   || | | | ||   |   |||  |  ||| ||   ||||| |   |||||          
GTGCTTCCACCTCTTTGTGCGGAACTTAGGAATTTAGTTTTGCAACCAATAATCTTGCCAATGGTTCTAACTATAGCACAGTCTCAGgtaatcttaagtgataacgaaaactaattttatcttgaaaccactgactgaatgaatgc-ttgaaag--ttgaaacctaaaattacctttgcag---------

upper sequence: GLYMA12G37070.1 (Glycine max), 5'ss of exon 8
lower sequence: AT1G22870.1 (Arabidopsis thaliana), 5'ss of exon 8
GTCCTTCCACCACTTTGTGCAGAGCTTAGGAATGTGGTGATACAGCCAATGATTTTACCAATGGTTCTAACCATTGCAGAGTCTCAGgtactaatatctctttcttttcttcacttccatagaatacctaaattagtgctcgtgctgacggcattgtaattaaaaatcaatattgcaccaagaaata----------
|| ||||| || |||||||| || ||||||||| |||| || || ||| ||||| | || ||||||||||| || |||||||||||||| ||        |||||  |||| | | |  || | | | | ||| ||  |   | ||   ||   | ||   | | | || |  | |   |  ||||           
GTGCTTCCTCCTCTTTGTGCTGAACTTAGGAATTTGGTTATGCAACCAGTGATTCTTCCCATGGTTCTAACTATAGCAGAGTCTCAGgtgct-------ttttctaatcttaagtact-tacatttcgtcaatcagatcgtattctattggaggttta--cagataccagtgattctatataaaatttgtttttctt

upper sequence: GLYMA12G37070.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv18s0089g00030.t01 (Vitis vinifera), 5'ss of exon 8
GTCCTTCCACCACTTTGTGCAGAGCTTAGGAATGTGGTGATACAGCCAATGATTTTACCAATGGTTCTAACCATTGCAGAGTCTCAGgtactaatatctctttcttttcttcacttccatagaatacctaaattagtgctcgtgc-tgacggcattgtaatt-------aaaaatcaatattgcaccaagaaata------
|| |||||||| ||||||||||| ||| | ||| ||||||| || ||||||||| | || |||||||| || || || |||||||||||| |||| |  ||| | | |  | |  |  |||   |  ||       | || | || |||  ||| ||   |         | || || |  ||    || | |||      
GTGCTTCCACCTCTTTGTGCAGAACTTCGAAATTTGGTGATGCAACCAATGATTCTTCCCATGGTTCTCACAATAGCGGAGTCTCAGgtattaattttgcttgcatgtgataa--tggataagttgtctttgacctttcttgagcatgattgcactgctgtcctatgtagataaccattgatgtcttaaaatatattgtag