1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GCAATGAATGGACAATATCTTTGCAATCGTCAAATTACAGTGTCATATGCTTATAAGAAAGACACTAAGGGTGAACGGCATGGTACCCCAGCAGgtgaggtcctttcttgctactagtactatctactttttgggattaattcatgcatattgtttgtttttgtagtatctggctatctgctaatatttcttctatggtgcag
species | Glycine max |
transcript | GLYMA12G36950.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: AGACACTAAGGGTGAACGGTCATGGTACCCCAGTCTAG AAAGAGTTTTGGCTGCAAGTAATCCAACTACACAGAAGAGCAGGCCTCATEST: gi|208219432|gb|GE018780.1|GE018780
genomic: AGACACTAAGGGTGAACGG-CATGGTACCCCAG-C-AGgtgaggtcct ... tatggtgcagAAAGAGTTTTGGCTGCAAGTAATCCAACTACACAGAAGAGCAGGCCTCAT
EST: AGACACTAAGGGTGAACGGCATGGTACCCCAGCAG AAAGAGTTTTGGCTGCAAGTAATCCAACTACACAGAAGAGCAGGCCTCATAEST: gi|208223041|gb|GE021738.1|GE021738
genomic: AGACACTAAGGGTGAACGGCATGGTACCCCAGCAGgtgaggtcct ... tatggtgcagAAAGAGTTTTGGCTGCAAGTAATCCAACTACACAGAAGAGCAGGCCTCATA
EST: AGACACTAAGGGTGAACGGCATGGTACCCCAGCAG AAAGAGTTTTGGCTGCAAGTAATCCAACTACACAGAAGAGCAGGCCTCATAEST: gi|193716934|gb|FK649872.1|FK649872
genomic: AGACACTAAGGGTGAACGGCATGGTACCCCAGCAGgtgaggtcct ... tatggtgcagAAAGAGTTTTGGCTGCAAGTAATCCAACTACACAGAAGAGCAGGCCTCATA
EST: ATATGCTTATAAGAAAGACACTAAGGGTGAACGGCATGGTACCCCAGCAG AAAGAGTTTTGGCTGCEST: gi|193459950|gb|FK428735.1|FK428735
genomic: ATATGCTTATAAGAAAGACACTAAGGGTGAACGGCATGGTACCCCAGCAGgtgaggtcct ... tatggtgcagAAAGAGTTTTGGCTGC
EST: GAAAGACACTAAGGGTGAACGGCATGGTACCCCAGCAG AAAGAGTTTTGGCTGCAAGTAATCCAACTACACAGAAGAGCAGGCCTCATAEST: gi|193644982|gb|FK588802.1|FK588802
genomic: GAAAGACACTAAGGGTGAACGGCATGGTACCCCAGCAGgtgaggtcct ... tatggtgcagAAAGAGTTTTGGCTGCAAGTAATCCAACTACACAGAAGAGCAGGCCTCATA
EST: ATATGCTTATAAGAAAGACACTAAGGGTGAACGGCATGGTACCCCAGCAG AAAGNGTTTTGGCTGCAAGTAATCCAACTACACAGAAGAGCAGGCCTCA
genomic: ATATGCTTATAAGAAAGACACTAAGGGTGAACGGCATGGTACCCCAGCAGgtgaggtcct ... tatggtgcagAAAGAGTTTTGGCTGCAAGTAATCCAACTACACAGAAGAGCAGGCCTCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAATGAATGGACAATATCTTTGCAATCGTCAAATTACAGTGTCATATGCTTATAAGAAAGACACTAAGGGTGAACGGCATGGTACCCCAGCAGgtgaggtcctttcttgctactagtactatctactttttgggattaattcatgcatattgtttgtttttgtagtatctggctatctgctaatatttcttctatggtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA