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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACTTTGTGGGGTTATCAGTATCTGATGGTTACATTGCCACTGGTTCAGAGACAAATGAGgtatttcacatgtccttttctatcagttttcttttcctattgattttacattactactgaaggtaaccttctgtgtggattag

Basic information

species Glycine max
transcript GLYMA12G35320.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G35320.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os01g52640.3 (Oryza sativa), 5'ss of exon 5
AACTTTGTGGGGTTATCAGTATCTGATGGTTACATTGCCACTGGTTCAGAGACAAATGAGgta--tttcacatgtccttttcta----tcagttttcttttccta--ttgattttacattactactg-aaggtaaccttctgtgtgga-ttag-------
|| ||||| ||  | ||  ||||||||||||||||||| ||||| ||||||||||||||||||  |||   | ||      | |    || |    || ||   |  || |||| |   |  ||| |  |    | ||| ||||   |  ||        
AATTTTGTTGGACTTTCTATATCTGATGGTTACATTGCTACTGGCTCAGAGACAAATGAGgtatgttttctaagtttccaccaaattctctgccgactatttgaaggttaatttcaatgtcatacagcgacaccagcttttgtgcaaagctaatcattgg

upper sequence: GLYMA12G35320.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G061602_T01 (Zea mays), 5'ss of exon 6
AACTTTGTGGGGTTATCAGTATCTGATGGTTACATTGCCACTGGTTCAGAGACAAATGAGgtat---ttcacatgtccttttctatcagttttcttttcctattgattttacattactactgaaggtaaccttctgtgtggattag--------------
||||| || ||  | ||  ||||||||||||||||||| ||||| || || |||||||||||||   |||    |      |    ||   || | |    || |   |   | |   | ||      || ||   |     | ||              
AACTTCGTTGGTCTTTCCATATCTGATGGTTACATTGCTACTGGCTCTGAAACAAATGAGgtatgcattccttagctaagcttccacaaacttgtctggacatcggactcgtagttagattggccaggactttacctacctttaagcaaaaatcataggg

upper sequence: GLYMA12G35320.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G079904_T01 (Zea mays), 5'ss of exon 6
AACTTTGTGGGGTTATCAGTATCTGATGGTTACATTGCCACTGGTTCAGAGACAAATGAGgtat----ttcacatgtccttttctatcagttttcttttcctattgatt----ttacatt----actactgaaggtaaccttctgtgtggat-tag----
||||| || ||  | ||  ||||||| ||||||||||| ||||| || || |||||||||||||    | ||    |    ||| |  |  ||      | | |   ||    ||| |||    | ||||  |  || | || ||        |||    
AACTTCGTTGGCCTTTCCATATCTGACGGTTACATTGCTACTGGCTCTGAAACAAATGAGgtatgcattccatggctaagcttccacaaagttgtcgaacatctgacttgtagttagattggccagtactttacttacctttatgcaaaatcatagggta

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|57575187|gb|CX548162.1|CX548162
EST:     GGTTATCAGTATCTGATGGTTACATTGCCACTGGTTCAGAGACAAATGAG                         GTGTTCATATACCACAAGGCCTTCCCCATGCCAGCATTGTCATTCAAGTTT
genomic: GGTTATCAGTATCTGATGGTTACATTGCCACTGGTTCAGAGACAAATGAGgtatttcaca ... tgtggattagGTGTTCATATACCACAAGGCCTTCCCCATGCCAGCATTGTCATTCAAGTTT
EST: gi|58019897|gb|CX706639.1|CX706639
EST:     GGTTATCAGTATCTGATGGTTACATTGCCACTGGTTCAGAGACAAATGAG                         GTGTTCATATACCACAAGGCCTTCCCCATGCCAGCATTGTCATTCAAGTTT
genomic: GGTTATCAGTATCTGATGGTTACATTGCCACTGGTTCAGAGACAAATGAGgtatttcaca ... tgtggattagGTGTTCATATACCACAAGGCCTTCCCCATGCCAGCATTGTCATTCAAGTTT
EST: gi|10238749|gb|BE807637.1|BE807637
EST:     GGTTATCAGTATCTGATGGTTACATTGCCACTGGTTCAGAGACAAATGAG                         GTGTTCATATACCACAAGGCCTTCCCCATGCCAGCATTGTCATTCAAGTTT
genomic: GGTTATCAGTATCTGATGGTTACATTGCCACTGGTTCAGAGACAAATGAGgtatttcaca ... tgtggattagGTGTTCATATACCACAAGGCCTTCCCCATGCCAGCATTGTCATTCAAGTTT
EST: gi|10845522|gb|BF068626.1|BF068626
EST:     GGTTATCAGTATCTGATGGTTACATTGCCACTGGTTCAGAGACAAATGAG                         GTGTTCATATACCACAAGGCCTTCCCCATGCCAGCATTGTCATTCAAGTTT
genomic: GGTTATCAGTATCTGATGGTTACATTGCCACTGGTTCAGAGACAAATGAGgtatttcaca ... tgtggattagGTGTTCATATACCACAAGGCCTTCCCCATGCCAGCATTGTCATTCAAGTTT
EST: gi|207737976|gb|GD715656.1|GD715656
EST:     GGTTATCAGTATCTGATGGTTACATTGCCACTGGTTCAGAGACAAATGAG                         GTGTTCATATACCACAAGGCCTTCCCCATGCCAGCATTGTCATTCAAGTTT
genomic: GGTTATCAGTATCTGATGGTTACATTGCCACTGGTTCAGAGACAAATGAGgtatttcaca ... tgtggattagGTGTTCATATACCACAAGGCCTTCCCCATGCCAGCATTGTCATTCAAGTTT
EST: gi|151394104|gb|EV263975.1|EV263975
EST:     TGCCACTGGTTCAGAGACAAATGAG                         GTGTTCATATACCACAAGGCCTTCCCCATGCCAGCATTGTCATTCAAGTTT
genomic: TGCCACTGGTTCAGAGACAAATGAGgtatttcaca ... tgtggattagGTGTTCATATACCACAAGGCCTTCCCCATGCCAGCATTGTCATTCAAGTTT
EST: gi|193633517|gb|FK579225.1|FK579225
EST:     GGTTATCAGTATCTGATGGTTACATTGCCACTGGTTCAGAGACAAATGAG                         GTGTTCATATACCACAAGGCCTTCCCCATGCCAGCATTGTCATTCAAGTTT
genomic: GGTTATCAGTATCTGATGGTTACATTGCCACTGGTTCAGAGACAAATGAGgtatttcaca ... tgtggattagGTGTTCATATACCACAAGGCCTTCCCCATGCCAGCATTGTCATTCAAGTTT
EST: gi|193568733|gb|FK527086.1|FK527086
EST:     GGTTATCAGTATCTGATGGTTACATTGCCACTGGTTCAGAGACAAATGAG                         GTGTTCATATACCACAAGGCCTTCCCCATGCCAGCATT
genomic: GGTTATCAGTATCTGATGGTTACATTGCCACTGGTTCAGAGACAAATGAGgtatttcaca ... tgtggattagGTGTTCATATACCACAAGGCCTTCCCCATGCCAGCATT
EST: gi|193460763|gb|FK427532.1|FK427532
EST:     AGAGACAAATGAG                         GTGTTCATATACCACAAGGCCTTCCCCATGCCAGCATTGTCATTCAAGTTT
genomic: AGAGACAAATGAGgtatttcaca ... tgtggattagGTGTTCATATACCACAAGGCCTTCCCCATGCCAGCATTGTCATTCAAGTTT