1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CGAATGGCGTGCCCTCATGGATGAAATGGCTGTCATTGCAACAAAGGAGTATCGCTCTGTTGTTTTCAAAGAACCTCGTTTTGTTGAATATTTCAGATGTgtaagtgctgcttatactcagtcttcagttgttaacctttgcttagaagatacccttcgaaaaatctagtagcttaaatggttggtaatttgaaacaaaa...
species | Glycine max |
transcript | GLYMA12G33820.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: ATCGCTCTGTTGTTTTCAAAGAACCTCGTTTTGTTGAATATTTCAGATGT GCAACTCCTGAGTTGGAGTATGGAAGAATGAACATTGGCAGTCGTCCATCAEST: gi|15285278|gb|BI469169.1|BI469169
genomic: ATCGCTCTGTTGTTTTCAAAGAACCTCGTTTTGTTGAATATTTCAGATGTgtaagtgctg ... tgcactgcagGCAACTCCTGAGTTGGAGTATGGAAGAATGAACATTGGCAGTCGTCCATCA
EST: ATCGCTCTGTTGTTTTCAAAGAACCTCGTTTTGNTGAATATTTCAGATGT GCAACTCCTGAGTTGGAGTATGGGAGAAATGA-CATTGGCAGTCGTCCCATEST: gi|151412183|gb|EV281995.1|EV281995
genomic: ATCGCTCTGTTGTTTTCAAAGAACCTCGTTTTGTTGAATATTTCAGATGTgtaagtgctg ... tgcactgcagGCAACTCCTGAGTTGGAGTATGGAAGAA-TGAACATTGGCAGTCGTCC-AT
EST: ATCGCTCTGTTGTTTTCAAAGAACCTCGTTTTGTTGAATATTTCAGATGT GCAACTCCTGAGTTGGAGTATGGAAGAATGAACATTGGCAGTCGTCCATCA
genomic: ATCGCTCTGTTGTTTTCAAAGAACCTCGTTTTGTTGAATATTTCAGATGTgtaagtgctg ... tgcactgcagGCAACTCCTGAGTTGGAGTATGGAAGAATGAACATTGGCAGTCGTCCATCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGAATGGCGTGCCCTCATGGATGAAATGGCTGTCATTGCAACAAAGGAGTATCGCTCTGTTGTTTTCAAAGAACCTCGTTTTGTTGAATATTTCAGATGTgtaagtgctgcttatactcagtcttcagttgttaacctttgcttagaagatacccttcgaaaaatctagtagcttaaatggttggtaatttgaaacaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaacaaa