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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGGCAATGACGAACTTCGTCGATCACCTGGCACTCCAGTTTTCACTGCACCAGAATGTTGTTTAGgttacagacttcttttcatgcttgctctgtggaatgtatgaaagtacatattctcactgcagtttttgttgatattatttag

Basic information

species Glycine max
transcript GLYMA12G29640.2
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G29640.2 (Glycine max), 5'ss of exon 8
lower sequence: Vv06s0004g02990.t01 (Vitis vinifera), 5'ss of exon 10
GATGGCAATGACGAACTTCGTCGATCACCTGGCACTCCAGTTTTCACTGCACCAGAATGTTGTTTAGgttacagacttcttttcatgcttg--ctctgtggaatgtatgaaagtacatattctcactgcagtttttgttga---tattatttag---------------
||||  ||||| || || || || || ||||||||||| ||||| ||||||||||| || ||||||||||   ||   ||| |  ||      |||| | | ||   | |||  |   |      | | | | |||   ||   | |   ||                 
GATGATAATGATGAGCTCCGCCGTTCTCCTGGCACTCCTGTTTTTACTGCACCAGAGTGCTGTTTAGgttggggatcccttctactggagaatctctttagcataattaaaatcatgcaggacatcagaaatatttacagagcatgtggcttttcctgtttattgacag

upper sequence: GLYMA12G29640.2 (Glycine max), 5'ss of exon 8
lower sequence: EFJ15000 (Selaginella moellendorffii), 5'ss of exon 7
GATGGCAATGACGAACTTCGTCGATCACCTGGCACTCCAGTTTTCACTGCACCAGAATGTTGTTTAGgttacagacttcttttcatgcttgctctgtggaatgtatgaaagtacatattctcactgcagtttttgttgatattatttag
|  |   ||||     | |||||||| ||||||||||| || ||||| ||||||||||| |||  ||||     | ||||  | ||    |||||   ||    ||||    |  | |  |   |   ||| || ||  | |     ||
GGCGATGATGATCTTTTACGTCGATCTCCTGGCACTCCTGTCTTCACAGCACCAGAATGCTGTAAAGGT-----ATTTCTCgtgattggagctcttccga---catgact-catgtgtgtttgtttt-gttctttttattctcggaaag