Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATACAAAGGACGGAATTAACAAGATTTCCTTAACAGGGTGTGATGCTCGCATATTCTGTTTAGGGGTCCGTATTGTTAAAAGACTCAGCATGCCAGAGgtagattacattctaaacttgcttaatttctaagcatagtattctggatgacttttggttccttcaatccaggcttattggaatagttaagttgatgtca...

Basic information

species Glycine max
transcript GLYMA12G29270.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G29270.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv06s0004g03180.t01 (Vitis vinifera), 5'ss of exon 11
ATATACAAAGGACGGAATTAACAAGATTTCCTTAACAGGGTGTGATGCTCGCATATTCTGTTTAGGGGTCCGTATTGTTAAAAGACTCAGCATGCCAGAGgtagattacattct-------aaacttgcttaatttctaagcatagtattctggatgacttttggttc--cttcaatccaggcttattggaatagttaagttgatgtca
|| ||| || || |||||||| |||||||||||||| || || |||||||| || ||||||||||||||  | ||||| ||  | |  |   | | | |||||  |   |||||       ||||||  ||  ||      || | | || |   | | | ||   |    || ||      |||||| | |   | ||  |       
ATGTACCAAAGATGGAATTAATAAGATTTCCTTAACGGGATGCGATGCTCGTATTTTCTGTTTAGGGGTTAGAATTGTAAAGCGGCGAACTGTTCAACAGgtatttccaattctttgaatgaaacttttttgtttataggccagatttttttctttaattcttatattatttttaaattgtccttattcggac--tcaaact-------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193372278|gb|FK338295.1|FK338295
EST:     GCATATTCTGTTTAGGGGTCCGTATTGTTAAAAGACTCAGCATGCCAGAG                         GTCCTAAGCATGATTCCAGAGGAGTCTGATGGTGAGCGTTTTGAAGATGCT
genomic: GCATATTCTGTTTAGGGGTCCGTATTGTTAAAAGACTCAGCATGCCAGAGgtagattaca ... tgttacctagGTCCTAAGCATGATTCCAGAGGAGTCTGATGGTGAGCGTTTTGAAGATGCT
EST: gi|207747494|gb|GD720227.1|GD720227
EST:     GCATATTCTGTTTAGGGGTCCGTATTGTTAAAAGACTCAGCATGCCAGAG                         GTCCTAAGCATGATTCCAGAGGAGTCTGATGGTGAGCGTTTTGAAGATGCT
genomic: GCATATTCTGTTTAGGGGTCCGTATTGTTAAAAGACTCAGCATGCCAGAGgtagattaca ... tgttacctagGTCCTAAGCATGATTCCAGAGGAGTCTGATGGTGAGCGTTTTGAAGATGCT
EST: gi|207732541|gb|GD709078.1|GD709078
EST:     CATATTCTGTTTAGGGGTCCGTATTGTTAAAAGAACTCAGCATGCCAGAG                         GTCCTAAGCATGATTCCAGAGGAGTCTGATGGTGAGCGTTTTGAAGATGCT
genomic: CATATTCTGTTTAGGGGTCCGTATTGTTAAAAG-ACTCAGCATGCCAGAGgtagattaca ... tgttacctagGTCCTAAGCATGATTCCAGAGGAGTCTGATGGTGAGCGTTTTGAAGATGCT
EST: gi|193317716|gb|FK283670.1|FK283670
EST:     GCATATTCTGTTTAGGGGTCCGTATTGTTAAAAGACTCAGCATGCCAGAG                         GTCCTAAGCATGATTCCAGAGGAGTCTGATGGTGAGCGTTTTGAAGATGCT
genomic: GCATATTCTGTTTAGGGGTCCGTATTGTTAAAAGACTCAGCATGCCAGAGgtagattaca ... tgttacctagGTCCTAAGCATGATTCCAGAGGAGTCTGATGGTGAGCGTTTTGAAGATGCT