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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTACCGTGCTCCGGAACTTATATTTGGGGCCACCGAATATACAACTGCCATAGATATATGGTCAACTGGTTGTGTAATGGCTGAATTACTTCTTGGACAGgtatttggttctttaaaaaaatgtgacaaatttttctcatttcatcatttctctgttttctgtcttcttttgcattttcctgaagttcaagttgatttgcag

Basic information

species Glycine max
transcript GLYMA12G28730.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G28730.2 (Glycine max), 5'ss of exon 8
lower sequence: AT1G57870.3 (Arabidopsis thaliana), 5'ss of exon 9
CTACCGTGCTCCGGAACTTATATTTGGGGCCACCGAATATACAACTGCCATAGATATATGGTCAACTGGTTGTGTAATGGCTGAATTACTTCTTGGACAGgtatttggttctttaaaaaaatgtgacaaatttttctcatttcatcatttctctgttttctgtcttcttttgcattttcctgaagttcaagttgatttgcag
||| ||||| || || || || ||||| |||||||| || |||||||| ||||| |||||||| || |||||||| ||||||||| | || ||||||||||| |   |  || ||     ||  |  | ||  || | |||  |   |||||      |||  ||  ||||   |  ||  |  |    | ||| ||| |||
CTATCGTGCCCCAGAGCTCATTTTTGGAGCCACCGAGTACACAACTGCAATAGACATATGGTCCACAGGTTGTGTGATGGCTGAACTGCTGCTTGGACAGgt-tggagcactatatttgcattagctatatgcttgttattcta---tttcttcaccctcttactcatttt---tgctctcgcgg----acttgttttacag

upper sequence: GLYMA12G28730.2 (Glycine max), 5'ss of exon 8
lower sequence: AT1G09840.1 (Arabidopsis thaliana), 5'ss of exon 8
CTACCGTGCTCCGGAACTTATATTTGGGGCCACCGAATATACAACTGCCATAGATATATGGTCAACTGGTTGTGTAATGGCTGAATTACTTCTTGGACAGgtatttggttctttaaaaaaatgtgacaaatttttctcatttcatcatttctctgttttctgtctt-cttttgcattttcctgaagttcaagttgatttgcag
||| |||||||| ||||| || ||||| ||||  ||||| |||||||| || ||||||||||| ||||||||||| ||||| ||| | |||||||||||||| |   |     |      ||  |  | || ||  ||  |||||  |   | | ||   |||||| || ||   |   | ||      || |||   | |||
CTATCGTGCTCCAGAACTCATTTTTGGTGCCAGTGAATACACAACTGCAATTGATATATGGTCCACTGGTTGTGTGATGGCCGAACTGCTTCTTGGACAGgt-taaagcatgatttttgcattagctatatgttgttctattcat--tcagtttattccttgtcttactattttgtgcccttg----ctaatttgtcgtacag

upper sequence: GLYMA12G28730.2 (Glycine max), 5'ss of exon 8
lower sequence: Vv12s0035g01060.t01 (Vitis vinifera), 5'ss of exon 7
CTACCGTGCTCCGGAACTTATATTTGGGGCCACCGAATATACAACTGCCATAGATATATGGTCAACTGGTTGTGTAATGGCTGAATTACTTCTTGGACAGgtatttggttctttaaaa-aaatgtgacaaattt---ttctcatttcatcatttctctgttttctgtcttcttttgcattttcctgaagttcaagttgatttgcag
 |||||||| || ||||| |||||||| ||||| |||||||| ||||| |||||||| ||||| ||||| ||||| ||||||||||| ||||| ||||||||| |    | || |    | ||||     | ||   ||| | ||||||||||||   ||  | |   |  ||  || |||  || |    ||  ||    | |||
TTACCGTGCCCCAGAACTCATATTTGGTGCCACTGAATATACGACTGCTATAGATATTTGGTCTACTGGCTGTGTGATGGCTGAATTGCTTCTGGGACAGgtagtacactgttaatttcagatgtagttgacttgccttcgcttttcatcatttccaagtcctgt---tatttaggcttttatctaa---ccatcttctggtacag

upper sequence: GLYMA12G28730.2 (Glycine max), 5'ss of exon 8
lower sequence: PP1S306_62V6.1 (Physcomitrella patens), 5'ss of exon 6
CTACCGTGCTCCGGAACTTATATTTGGGGCCACCGAATATACAACTGCCATAGATATATGGTCAACTGGTTGTGTAATGGCTGAATTACTTCTTGGACAGgtatttggttctttaaaaa---------aatgtgacaaatttttctcatttcatcatttctctgttttctgtcttcttttgcattttcctgaagttcaagttgatttgcag
||||||||||||||| ||||| ||||| || || || || || |||||||||||||||||||| |  ||||| || ||||| ||  | || || ||||||||| | |||     |             | |  ||  | || ||   | |    |        |||  |||    || ||| ||| |  || ||  |||| | |       
CTACCGTGCTCCGGAGCTTATTTTTGGAGCGACGGAGTACACGACTGCCATAGATATATGGTCGATGGGTTGCGTGATGGCAGAGCTTCTACTAGGACAGgtactcggtcgccgatgggctctcttccacttcgaagagttgtttcaagtgacgcggggggtcgttgactgggg-ctgttg-attgttttgtag--caagctaa-------

upper sequence: GLYMA12G28730.2 (Glycine max), 5'ss of exon 8
lower sequence: EFJ07923 (Selaginella moellendorffii), 5'ss of exon 8
CTACCGTGCTCCGGAACTTATATTTGGGGCCACCGAATATACAACTGCCATAGATATATGGTCAACTGGTTGTGTAATGGCTGAATTACTTCTTGGACAGgtatttggttctttaaaaaaatgtgacaaatttttctcatttcatcatttctctgttttctgtcttcttttgcattttcctgaagttcaagttgatttgcag
 |||||||||||||||||||||||||| || || || || ||||| ||||| || || ||||| ||||| || ||  ||||||| ||||||||||| |||||       | | ||        |  |||   | |  ||||    || | | | || |  |    || ||| || | | | |                    
TTACCGTGCTCCGGAACTTATATTTGGTGCAACTGACTACACAACAGCCATCGACATCTGGTCGACTGGATGCGTTCTGGCTGAGTTACTTCTTGGTCAGgt-------tgtatacctcgtccttgcaa--ctcttccattatgccact-caccgtctcat-caatcatttccactgtgcag--------------------

upper sequence: GLYMA12G28730.2 (Glycine max), 5'ss of exon 8
lower sequence: EFJ07216 (Selaginella moellendorffii), 5'ss of exon 8
CTACCGTGCTCCGGAACTTATATTTGGGGCCACCGAATATACAACTGCCATAGATATATGGTCAACTGGTTGTGTAATGGCTGAATTACTTCTTGGACAGgtatttggttctttaaaaaaatgtgacaaatttttctcatttcatcatttctctgttttctgtcttcttttgcattttcctgaagttcaagttgatttgcag
||||||||||||||||||||||||||| || || || || ||||| ||||| || || ||||| ||||| || ||  ||||||| ||||||||||| |||||       | | ||        |  |||   | |  ||||    || | | | || |  |    || ||| || | | | |                    
CTACCGTGCTCCGGAACTTATATTTGGTGCAACTGACTACACAACAGCCATCGACATCTGGTCGACTGGATGCGTTCTGGCTGAGTTACTTCTTGGTCAGgt-------tgtatacctcgtccttgcaa--ctcttccattatgccact-caccgtctcat-caatcatttccactgtgcag--------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6719212|gb|AW306859.1|AW306859
EST:     TAGATATATGGTCAACTGGTTGTGTAATGGCTGAATTACTTCTTGGACAG                         CCCTTGTTTCCTGGAGAGAGTGGAGTTGATCAGCTAGTTGAAATCATCAAG
genomic: TAGATATATGGTCAACTGGTTGTGTAATGGCTGAATTACTTCTTGGACAGgtatttggtt ... tgatttgcagCCCTTGTTTCCTGGAGAGAGTGGAGTTGATCAGCTAGTTGAAATCATCAAG
EST: gi|151408852|gb|EV278660.1|EV278660
EST:     TAGATATATGGTCAACTGGTTGTGTAATGGCTGAATTACTTCTTGGACAG                         CCCTTGTTTCCTGGAGAGAGTGGAGTTGATCAGCTAGTTGAAATCATCAAG
genomic: TAGATATATGGTCAACTGGTTGTGTAATGGCTGAATTACTTCTTGGACAGgtatttggtt ... tgatttgcagCCCTTGTTTCCTGGAGAGAGTGGAGTTGATCAGCTAGTTGAAATCATCAAG
EST: gi|193630915|gb|FK585070.1|FK585070
EST:     AAGATATATGGTCAACTGGTTGTGTAATGGCTGAATTACTTCTTGGACAG                         CCCTTGTTTCCTGGAGAGAGTGG
genomic: A-GATATATGGTCAACTGGTTGTGTAATGGCTGAATTACTTCTTGGACAGgtatttggtt ... tgatttgcagCCCTTGTTTCCTGGAGAGAGTGG
EST: gi|208208274|gb|GE004247.1|GE004247
EST:     TAGATATATGGTCAACTGGTTGTGTAATGGCTGAATTACTTCTTGGACAG                         CCCTTGTTTCCTGGAGAGAGTGGAGTTGATCAGCTAGTTGAAATCATCAAG
genomic: TAGATATATGGTCAACTGGTTGTGTAATGGCTGAATTACTTCTTGGACAGgtatttggtt ... tgatttgcagCCCTTGTTTCCTGGAGAGAGTGGAGTTGATCAGCTAGTTGAAATCATCAAG
EST: gi|13312538|gb|BG406189.1|BG406189
EST:     TAGATATATGGTCAACTGGTTGTGTAATGGCTGAATTACTTCTTGGACAG                         CCCTTGTTTCCTGGAGAGAGTGGAGTTGATCAGCTAGTTGAAATCATCAAG
genomic: TAGATATATGGTCAACTGGTTGTGTAATGGCTGAATTACTTCTTGGACAGgtatttggtt ... tgatttgcagCCCTTGTTTCCTGGAGAGAGTGGAGTTGATCAGCTAGTTGAAATCATCAAG
EST: gi|208078311|gb|GD877523.1|GD877523
EST:     TAGATATATGGTCAACTGGTTGTGTAATGGCTGAATTACTTCTTGGACAG                         CCCTTGTTTCCTGGAGAGAGTGGAGTTGATCAGCTAGTTGAAATCATCAAG
genomic: TAGATATATGGTCAACTGGTTGTGTAATGGCTGAATTACTTCTTGGACAGgtatttggtt ... tgatttgcagCCCTTGTTTCCTGGAGAGAGTGGAGTTGATCAGCTAGTTGAAATCATCAAG
EST: gi|13479623|gb|BG508966.1|BG508966
EST:     TAGATATATGGTCAACTGGTTGTGTAATGGCTGAATTACTTCTTGGACAG                         CCCTTGTTTCCTGGAGAGAGTGGAGTTGATCAGCTAGTTGAAATCATCAAG
genomic: TAGATATATGGTCAACTGGTTGTGTAATGGCTGAATTACTTCTTGGACAGgtatttggtt ... tgatttgcagCCCTTGTTTCCTGGAGAGAGTGGAGTTGATCAGCTAGTTGAAATCATCAAG
EST: gi|7589778|gb|AW705545.1|AW705545
EST:     GTAATGGCTGAATTACTTCTTGGACAG                         CCCTTGTTTCCTGGAGAGAGTGGAGTTGATCAGCTAGTTGAAATCATCAAG
genomic: GTAATGGCTGAATTACTTCTTGGACAGgtatttggtt ... tgatttgcagCCCTTGTTTCCTGGAGAGAGTGGAGTTGATCAGCTAGTTGAAATCATCAAG
EST: gi|193434108|gb|FK402332.1|FK402332
EST:     TAGATATATGGTCAACTGGTTGTGTAATGGCTGAATTACTTCTTGGACAG                         CCCTTGTTTCCTGGAGAGAGTGGAGTTGATCAGCTAGTTGAAATCATCAAG
genomic: TAGATATATGGTCAACTGGTTGTGTAATGGCTGAATTACTTCTTGGACAGgtatttggtt ... tgatttgcagCCCTTGTTTCCTGGAGAGAGTGGAGTTGATCAGCTAGTTGAAATCATCAAG