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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGAATGCTCTTCGCTTGTTTTCACCTCGCCTTGCAGTTGTTGATGAACATCTGACTCGACACTTACCTAGGCAGTGGTTAACATCTTCAGCACTTGAGgtatggaataggcatgccttggtcttttttgaacttgattaatattttgttgcatctgtattattatcccaatgtgttgaagaaatgcaattatgtgaac...

Basic information

species Glycine max
transcript GLYMA12G28490.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G28490.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os05g01470.2 (Oryza sativa), 5'ss of exon 8
TGAGAATGCTCTTCGCTTGTTTTCACCTCGCCTTGCAGTTGTTGATGAACATCTGACTCGACACTTACCTAGGCAGTGGTTAACATCTTCAGCACTTGAGgtatggaataggcatgccttggtcttttttgaacttgattaatattttgttgcatctgtattat-tatcccaa-tgtgttgaagaaatg-caattatgtgaac
 || ||||||||||| || || |||||    |||||  | |||||||||||||||||  ||||||| || | ||| |||||||| |||| |||| ||||||||    | |    |  |||     |   |||   |  |  | |||     | || ||| |     |||  |  | |  |  || | |  |  | || |    
AGAAAATGCTCTTCGATTATTCTCACCAGCGCTTGCGATCGTTGATGAACATCTGACCAGACACTTGCCAAAGCAATGGTTAACTTCTTTAGCAATTGAGgtacctta-atttctctcttttctgtgagtgagtcttgtgcacattgaccagaatttgtttggcgcatctgagctctactttagtagtctctgtcatcttc--

upper sequence: GLYMA12G28490.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G098039_T01 (Zea mays), 5'ss of exon 8
TGAGAATGCTCTTCGCTTGTTTTCACCTCGCCTTGCAGTTGTTGATGAACATCTGACTCGACACTTACCTAGGCAGTGGTTAACATCTTCAGCACTTGAGgtatggaataggcatgccttggtcttttttgaacttgattaatattttgttgcatctgtattattatcccaatgtgttgaagaaatgcaattatgtgaac
 |||||||||||||  ||||| |||||    |||||| |||||||||||||| | ||  ||||||| || | ||| ||||||||||||| |||| ||||||||     | |  |  || |  | | | |   | |||       | | | ||  ||||||  |     |  || | ||   ||| | ||           
AGAGAATGCTCTTCAATTGTTCTCACCGGCGCTTGCAATTGTTGATGAACATTTAACCAGACACTTGCCCAAGCAATGGTTAACATCTTTAGCAATTGAGgtacct--tggttactccattatatctgtgtgagttgtcatgggtctggatgt-tctgtagaa-----cacatttttttgtgaatttcag----------

upper sequence: GLYMA12G28490.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv12s0035g01920.t01 (Vitis vinifera), 5'ss of exon 9
TGAGAATGCTCTTCGCTTGTTTTCACCTCGCCTTGCAGTTGTTGATGAACATCTGACTCGACACTTACCTAGGCAGTGGTTAACATCTTCAGCACTTGAGgtatggaataggcatgccttggtcttttttgaacttgattaatattttgttgcatctgtattattatcccaatgtgttgaagaaatgcaattatgtgaac-----
||||||||||||||| || || ||||| || |||||| ||||||||||| |||||||||||||  | || || |||||||||||||| |    | ||||||||||   ||   ||   ||   || || |    |  |||  ||| | ||   | ||  |  || ||    || | || |  ||||   |||       |     
TGAGAATGCTCTTCGATTATTCTCACCCCGTCTTGCAATTGTTGATGAAGATCTGACTCGACATCTTCCAAGACAGTGGTTAACATCCTTGAAAATTGAGgtatgcccta---atttgttatactcttatactttgtatttttatat-gtccaagcttcaccatgattttgatttttttactaaat-tgattgcacattcacata

upper sequence: GLYMA12G28490.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv12s0035g02060.t01 (Vitis vinifera), 5'ss of exon 1
TGAGAATGCTCTTCGCTTGTTTTCACCTCGCCTTGCAGTTGTTGATGAACATCTGACTCGACACTTACCTAGGCAGTGGTTAACATCTTCAGCACTTGAGgtatggaataggcatgccttggtcttttttgaacttgattaatattttgttgcatctgtattattatcccaatgtgttgaagaaatgcaattatgtgaac--
||||||||||||||  || || ||||| || |||||| |||||||||||||||||||| ||||  | || || |||||||||||||| |    | ||||||||||| |||    |||  || |||| |      |   || |||| |    || ||   || ||| |     | | ||   | | |  | |||| || ||  
TGAGAATGCTCTTCAATTATTCTCACCCCGTCTTGCAATTGTTGATGAACATCTGACTTGACATCTTCCAAGACAGTGGTTAACATCCTTGAAAATTGAGgtatggcataa-tttgcaatgctcttatactttgtatttttatatgtccaagcttcaccatgattttaatttttttttttggtactaaatttat-tgcacat