1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CCATTATTTCCTGGAGAAAACCAAGTGGACCAACTTGTGGAAATTATCAAGgtgatgtcccttctatatgagtgtctccatggattgcagaatatatctgcagagataattatttagatgtcttcttgtag
species | Glycine max |
transcript | GLYMA12G15470.2 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CATTATTTCCTGGAGAAAACCAAGTGGACCAACTTGTGGAAATTATCAAG GTTCTTGGTACTCCAACACGCGAGGAAATCCGTTGTATGAACCCAAATTATEST: gi|10237492|gb|BE806380.1|BE806380
genomic: CATTATTTCCTGGAGAAAACCAAGTGGACCAACTTGTGGAAATTATCAAGgtgatgtccc ... cttcttgtagGTTCTTGGTACTCCAACACGCGAGGAAATCCGTTGTATGAACCCAAATTAT
EST: CATTATTTCCTGGAGAAAACCAAGTGGACCAACTTGTGGAAATTATCAAG GTTCTTGGTACTCCAACACGCGAAGAAATCCGTTGTATGAACCCAAATTATEST: gi|208284980|gb|GE086942.1|GE086942
genomic: CATTATTTCCTGGAGAAAACCAAGTGGACCAACTTGTGGAAATTATCAAGgtgatgtccc ... cttcttgtagGTTCTTGGTACTCCAACACGCGAGGAAATCCGTTGTATGAACCCAAATTAT
EST: CATTATTTCCTGGAGAAAACCAAGTGGACCAACTTGTGGAAATTATCAAG GTTCTTGGTACTCCAACACGCGAGGAAATACGTTGTATGAACCCAAATTATEST: gi|208074942|gb|GD875439.1|GD875439
genomic: CATTATTTCCTGGAGAAAACCAAGTGGACCAACTTGTGGAAATTATCAAGgtgatgtccc ... cttcttgtagGTTCTTGGTACTCCAACACGCGAGGAAATCCGTTGTATGAACCCAAATTAT
EST: CATTATTTCCTGGAGAAAACCAAGTGGACCAACTTGTGGAAATTATCAAG GTTCTTGGTACTCCAACACGCGAGGAAATCCGTTGTATGAACCCAAATTATEST: gi|193690271|gb|FK634568.1|FK634568
genomic: CATTATTTCCTGGAGAAAACCAAGTGGACCAACTTGTGGAAATTATCAAGgtgatgtccc ... cttcttgtagGTTCTTGGTACTCCAACACGCGAGGAAATCCGTTGTATGAACCCAAATTAT
EST: CATTATTTCCTGGAGAAAACCAAGTGGACCAACTTGTGGAAATTATCAAG GTTCTTGGTACTCCAACACGCGAGGAAATCCGTTGTATGAACCCAAATTAT
genomic: CATTATTTCCTGGAGAAAACCAAGTGGACCAACTTGTGGAAATTATCAAGgtgatgtccc ... cttcttgtagGTTCTTGGTACTCCAACACGCGAGGAAATCCGTTGTATGAACCCAAATTAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCATTATTTCCTGGAGAAAACCAAGTGGACCAACTTGTGGAAATTATCAAGgtgatgtcccttctatatgagtgtctccatggattgcagaatatatctgcagagataattatttagatgtcttcttgtag
- - - - - TGGAGA
- - - - - - GGAGAA
- - - - - - - - - - - AGTGGA