1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
CCATTATTTCCTGGAGAAAACCAAGTGGACCAACTTGTGGAAATTATCAAGgtgatgtcccttctatatgagtgtctccatggattgcagaatatatctgcagagataattatttagatgtcttcttgtag
species | Glycine max |
transcript | GLYMA12G15470.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CATTATTTCCTGGAGAAAACCAAGTGGACCAACTTGTGGAAATTATCAAG GTTCTTGGTACTCCAACACGCGAGGAAATCCGTTGTATGAACCCAAATTATEST: gi|10237492|gb|BE806380.1|BE806380
genomic: CATTATTTCCTGGAGAAAACCAAGTGGACCAACTTGTGGAAATTATCAAGgtgatgtccc ... cttcttgtagGTTCTTGGTACTCCAACACGCGAGGAAATCCGTTGTATGAACCCAAATTAT
EST: CATTATTTCCTGGAGAAAACCAAGTGGACCAACTTGTGGAAATTATCAAG GTTCTTGGTACTCCAACACGCGAAGAAATCCGTTGTATGAACCCAAATTATEST: gi|16996079|gb|BM085451.1|BM085451
genomic: CATTATTTCCTGGAGAAAACCAAGTGGACCAACTTGTGGAAATTATCAAGgtgatgtccc ... cttcttgtagGTTCTTGGTACTCCAACACGCGAGGAAATCCGTTGTATGAACCCAAATTAT
EST: CATTATTTCCTGGAGAAAACCAAGTGGACCAACTTGTGGAAATTATCAAG GTTCTTGGTACTCCAACACGCGAGGAAATCCGTTGTATGAACCCAAATTATEST: gi|193713415|gb|FK651922.1|FK651922
genomic: CATTATTTCCTGGAGAAAACCAAGTGGACCAACTTGTGGAAATTATCAAGgtgatgtccc ... cttcttgtagGTTCTTGGTACTCCAACACGCGAGGAAATCCGTTGTATGAACCCAAATTAT
EST: GTGGAAATTATCAAG G-TCTTGGTACTCCAACACGCGAGGAAATCCGTTGTATGAACCCAAATTATEST: gi|193532704|gb|FK489794.1|FK489794
genomic: GTGGAAATTATCAAGgtgatgtccc ... cttcttgtagGTTCTTGGTACTCCAACACGCGAGGAAATCCGTTGTATGAACCCAAATTAT
EST: CAACTTGTGGAAATTATCAAG GTTCTTGGTACTCCAACACGCGAGGAAATCCGTTGTATGAACCCAAATTATEST: gi|208260673|gb|GE059429.1|GE059429
genomic: CAACTTGTGGAAATTATCAAGgtgatgtccc ... cttcttgtagGTTCTTGGTACTCCAACACGCGAGGAAATCCGTTGTATGAACCCAAATTAT
EST: GAGAAAACCAAGTGGACCAACTTGTGGAAATTATCAAG GTTCTTGGTACTCCAACACGCGAGGAAATCCGTTGTATGAACCCAAATTATEST: gi|193404932|gb|FK373359.1|FK373359
genomic: GAGAAAACCAAGTGGACCAACTTGTGGAAATTATCAAGgtgatgtccc ... cttcttgtagGTTCTTGGTACTCCAACACGCGAGGAAATCCGTTGTATGAACCCAAATTAT
EST: ACCAACTTGTGGAAATTATCAAG GTTCTTGGTACTCCAACACGCGAGGAAATCCGTTGTATGAACCCAAATTATEST: gi|208284980|gb|GE086942.1|GE086942
genomic: ACCAACTTGTGGAAATTATCAAGgtgatgtccc ... cttcttgtagGTTCTTGGTACTCCAACACGCGAGGAAATCCGTTGTATGAACCCAAATTAT
EST: CATTATTTCCTGGAGAAAACCAAGTGGACCAACTTGTGGAAATTATCAAG GTTCTTGGTACTCCAACACGCGAGGAAATACGTTGTATGAACCCAAATTATEST: gi|208074942|gb|GD875439.1|GD875439
genomic: CATTATTTCCTGGAGAAAACCAAGTGGACCAACTTGTGGAAATTATCAAGgtgatgtccc ... cttcttgtagGTTCTTGGTACTCCAACACGCGAGGAAATCCGTTGTATGAACCCAAATTAT
EST: CATTATTTCCTGGAGAAAACCAAGTGGACCAACTTGTGGAAATTATCAAG GTTCTTGGTACTCCAACACGCGAGGAAATCCGTTGTATGAACCCAAATTATEST: gi|193690271|gb|FK634568.1|FK634568
genomic: CATTATTTCCTGGAGAAAACCAAGTGGACCAACTTGTGGAAATTATCAAGgtgatgtccc ... cttcttgtagGTTCTTGGTACTCCAACACGCGAGGAAATCCGTTGTATGAACCCAAATTAT
EST: CATTATTTCCTGGAGAAAACCAAGTGGACCAACTTGTGGAAATTATCAAG GTTCTTGGTACTCCAACACGCGAGGAAATCCGTTGTATGAACCCAAATTATEST: gi|22525206|gb|BU084017.1|BU084017
genomic: CATTATTTCCTGGAGAAAACCAAGTGGACCAACTTGTGGAAATTATCAAGgtgatgtccc ... cttcttgtagGTTCTTGGTACTCCAACACGCGAGGAAATCCGTTGTATGAACCCAAATTAT
EST: CATTATTTCCTGGAGAAAACCAAGTGGACCAACTTGTGGAAATTATCAAG GTTCTTGGTACTCCAACACGCGAGGAAATCCGTTGTATGAACCCAAATTATEST: gi|19935688|gb|BQ080542.1|BQ080542
genomic: CATTATTTCCTGGAGAAAACCAAGTGGACCAACTTGTGGAAATTATCAAGgtgatgtccc ... cttcttgtagGTTCTTGGTACTCCAACACGCGAGGAAATCCGTTGTATGAACCCAAATTAT
EST: CATTATTTCCTGGAGAAAACCAAGTGGACCAACTTGTGGAAATTATCAAG GTTCTTGGTACTCCAACACGCGAGGAAATCCGTTGTATGAACCCAAATTAT
genomic: CATTATTTCCTGGAGAAAACCAAGTGGACCAACTTGTGGAAATTATCAAGgtgatgtccc ... cttcttgtagGTTCTTGGTACTCCAACACGCGAGGAAATCCGTTGTATGAACCCAAATTAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCATTATTTCCTGGAGAAAACCAAGTGGACCAACTTGTGGAAATTATCAAGgtgatgtcccttctatatgagtgtctccatggattgcagaatatatctgcagagataattatttagatgtcttcttgtag
- - - - - TGGAGA
- - - - - - GGAGAA
- - - - - - - - - - - AGTGGA