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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCCAACCATCTGGTTTCTTGCAATTATCTATTTTATTTCTGGTGCTCCAGGATCCTATGTGTTGTGGTATCGCCCTCTTTATCGTGCTATGAGgtagtgttcaatcagatttaatgcaatttttgtagtttagaacagggatatctgcttaagagtttttcagcctatttgtttaactgaaaaggaaaaaaaa...

Basic information

species Glycine max
transcript GLYMA12G11820.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G11820.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os01g57220.1 (Oryza sativa), 5'ss of exon 7
GTCCAACCATCTGGTTTCTTGCAATTATCTATTTTATTTCTGGTGCTCCAGGATCCTATGTGTTGTGGTATCGCCCTCTTTATCGTGCTATGAGgtagtgttcaatcagatttaatgcaatttttgtagtttagaacagggatatctgcttaagagtttttcagcctatttgtttaactgaaaaggaaaaaaaa
||   |  |||||||| || || |||||||| ||||| |||||||  || ||| |||||||||| ||||||||||| |||||   ||| ||||||| |||         || || |    |||||||  |||         || ||| ||||    |     ||  ||||  |  ||   |    | |      
GTGTTATGATCTGGTTGCTAGCCATTATCTACTTTATATCTGGTGTACCTGGAGCCTATGTGTTATGGTATCGCCCCCTTTACAATGCGATGAGgttgtg--------aatatacttgtgtttttgttatttctgcacactatttcttcttatatttgacatagtgtattgttacaatgtatgttgcag-----

upper sequence: GLYMA12G11820.1 (Glycine max), 5'ss of exon 8
lower sequence: AT2G20840.1 (Arabidopsis thaliana), 5'ss of exon 7
GTCCAACCATCTGGTTTCTTGCAATTATCTATTTTATTTCTGGTGCTCCAGGATCCTATGTGTTGTGGTATCGCCCTCTTTATCGTGCTATGAGgtagtgttcaatcagatttaatgcaatttttgtagtttagaacagggatatctgcttaagagtttttcagcctatttgtttaactgaaaaggaaaaaaaa----------------------------------------------------------------------
||||||| || |||||||| || ||||||||||| || || || | ||| ||| | |||||  ||||||||||||||||||||||||| ||||||||    |  ||   | ||||    ||||||    |||| || |    ||||||||   | ||  |   |    ||| ||||   | |||  ||||| |                                                                       
GTCCAACAATATGGTTTCTAGCTATTATCTATTTCATATCAGGGGTTCCTGGAGCGTATGTTATGTGGTATCGCCCTCTTTATCGTGCCATGAGgta----ttcatgccacttaa---gatttttcc--tttaaaatatct-tatctgctactgcgtcgtgt-gttcctttatttagagggaaaacaaaaagagtattccagatagcatcgtagttaagagtcaaaactttcattgagatgtgtgttgatttggttgtgtgcag

upper sequence: GLYMA12G11820.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv12s0059g01930.t01 (Vitis vinifera), 5'ss of exon 7
GTCCAACCATCTGGTTTCTTGCAATTATCTATTTTATTTCTGGTGCTCCAGGATCCTATGTGTTGTGGTATCGCCCTCTTTATCGTGCTATGAGgtagtgttcaatcagatttaatgcaatttttgtagtttagaacagggatatctgcttaagagtttttcagcctatttgtttaactgaaaaggaaaaaaaa-------
|||| || || ||||||||||| || ||||| ||  | || || | ||||||| | ||||||||||||||||| |||||||||||||| |||||||| | || |     |||  |  ||    |   |  ||| | ||   | |      ||    | | |||| ||     ||  |  | |  ||       |       
GTCCGACAATTTGGTTTCTTGCCATCATCTACTTCTTATCAGGGGTTCCAGGAGCTTATGTGTTGTGGTATCGTCCTCTTTATCGTGCCATGAGgtactatttatggttattccaaacatgactccca--ttatatcatccacac-----tagacatatatcagacttccaattgtaggggatgggtcctgtcacgccatt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254342825|gb|GR858987.1|GR858987
EST:     GCTCCAGGATCCTATGTGTTGTGGTATCGCCCTCTTTATCGTGCTATGAG                         GACTGACAGTGCTCTGAAATTTGGGCTGGTTCTTCTTGCTTTACATGTTGC
genomic: GCTCCAGGATCCTATGTGTTGTGGTATCGCCCTCTTTATCGTGCTATGAGgtagtgttca ... cgtgttacagGACTGACAGTGCTCTGAAATTTGG-CTGGTTCTTCTTGCTTTACATGTTGC
EST: gi|254342826|gb|GR858988.1|GR858988
EST:     GCTCCAGGATCCTATGTGTTGTGGTATCGCCCTCTTTATCGTGCTATGAG                         GACTGACAGTGCTCTGAAATTTGGCTGGTTCTTCTTGCTTTACATG
genomic: GCTCCAGGATCCTATGTGTTGTGGTATCGCCCTCTTTATCGTGCTATGAGgtagtgttca ... cgtgttacagGACTGACAGTGCTCTGAAATTTGGCTGGTTCTTCTTGCTTTACATG
EST: gi|7691396|gb|AW759524.1|AW759524
EST:     GCTCCAGGATCCTATGTGTTGTGGTATCGCCCTCTTTATCGTGCTATGAG                         GACTGACAGTGCTCTGAAATTTGGCTGGTTCTTCTTGCTTTACATG
genomic: GCTCCAGGATCCTATGTGTTGTGGTATCGCCCTCTTTATCGTGCTATGAGgtagtgttca ... cgtgttacagGACTGACAGTGCTCTGAAATTTGGCTGGTTCTTCTTGCTTTACATG
EST: gi|151408018|gb|EV277833.1|EV277833
EST:     GCTCCAGGATCCTATGTGTTGTGGTATCGCCCTCTTTATCGTGCTATGAG                         GACTGACAGTGCTCTGAAATTTGGCTGGTTCTTCTTGCTTTACATG
genomic: GCTCCAGGATCCTATGTGTTGTGGTATCGCCCTCTTTATCGTGCTATGAGgtagtgttca ... cgtgttacagGACTGACAGTGCTCTGAAATTTGGCTGGTTCTTCTTGCTTTACATG