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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAACACTGGGAGAAACTCTAGTTAGACATCGATCAAAACCACGGATATACATTGGATGCATGAAATCTGGGCCTGTCCTATCCCAAAAgtgagaaatgcttatttttgtttttattgaattgaattactaaagcactttgacctgtagcttctaacctgagaaatactttgttgcag

Basic information

species Glycine max
transcript GLYMA12G10520.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G10520.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os02g06840.2 (Oryza sativa), 5'ss of exon 9
CAACACTGGGAGAAACTCTAGTTAGACATCGATCAAAACCACGGATATACATTGGATGCATGAAATCTGGGCCTGTCCTATCCCAAAAgtgag------aaatgcttatttttgtttttattga-attgaattactaaagcactt--tgacctgtagctt--ctaacctgagaaatactttgt-tgcag
||||||| ||| | | | ||  ||  |||  ||  || ||  |  |||| |||||||||||||||||||| ||||||||| |  | |||| ||      | ||| || |   |||| ||  ||| | ||  |   |        |  || |||  |  ||  ||||  |  |  |  | |||| | |||
CAACACTTGGACAGATTTTATCTAATCATGCATTGAAGCCCAGAGTATATATTGGATGCATGAAATCTGGACCTGTCCTAACTGAGAAgtaagtgcatcacatggttttaactgttctttctgacaatgtctcctttccttttctcatgccctcaaaatttgctaagttttgttaacccttgtctccag

upper sequence: GLYMA12G10520.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G132866_T02 (Zea mays), 5'ss of exon 7
CAACACTGGGAGAAACTCTAGTTAGACATCGATCAAAACCACGGATATACATTGGATGCATGAAATCTGGGCCTGTCCTATCCCAAAAgtgagaaatgcttatttttgtttttattgaattgaattactaaagcactttgacctgtagcttctaacctgagaa-atactttgttgcag-----
|||| || ||| | | |||    | ||||  ||  || ||  |  | ||||| ||||||||||||||||| |||||| ||||| |||||| ||     ||| |        |       |    | |  | || | |||  |    || |  | ||    |    | |||   | ||      
CAACGCTCGGACAGATTCTGTCGAAACATGCATTGAAGCCGAGAGTGTACATCGGATGCATGAAATCTGGACCTGTCTTATCCGAAAAgtaagcttatcttgtgggcagagtc--caggtctcttgaggatagtaattttgctgaaagttgttgacacatgtttgtgcttccctccactccag

upper sequence: GLYMA12G10520.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G007185_T01 (Zea mays), 5'ss of exon 8
CAACACTGGGAGAAACTCTAGTTAGACATCGATCAAAACCACGGATATACATTGGATGCATGAAATCTGGGCCTGTCCTATCCCAAAAgtgagaaatgcttatttttgtt-tttattgaattgaattactaaagcactttgacctgtagcttctaacctgagaaatactttgttgcag
||||||| ||| | |   ||   | ||||   ||||| ||  || ||||||||||||||||||| ||||| |||||||| ||  | |||| |  ||      | | | || || |||    |  |  || ||    ||||  || || | | | |   |||||  | ||    | |||
CAACACTTGGAAATATCTTATCCAAACATATTTCAAAGCCCAGGGTATACATTGGATGCATGAAGTCTGGCCCTGTCCTCTCTGACAAgtaaagaaaaagagtctcttttgttcattagtatttaggac-aacatgcttttgccagttgttacaa---tgagat-tgctgctgtccag

upper sequence: GLYMA12G10520.1 (Glycine max), 5'ss of exon 8
lower sequence: AT1G05170.2 (Arabidopsis thaliana), 5'ss of exon 8
CAACACTGGGAGAAACTCTAGTTAGACATCGATCAAAACCACGGATATACATTGGATGCATGAAATCTGGGCCTGTCCTATCCCAAAAgtgagaaatgcttatttttgtttttattgaattgaattactaaagcactttgacctgtagcttctaacctgagaaatactttgttgcag
|||| || || |||||||| |||||||| ||   |||||||||| | || ||||| |||||||||||||| |||||||| || ||||||| |   || |||    ||   |   |   ||  | ||  ||       |||    ||    | |    |  | |  |           
CAACTCTTGGGGAAACTCTTGTTAGACACCGGAAAAAACCACGGGTCTATATTGGTTGCATGAAATCTGGCCCTGTCCTCTCTCAAAAgtaaagcat-cttccagtttcctccttcatatcaattttgtat----tcttgttaagtcatctttgttttatggagcag----------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13181561|gb|BG352901.1|BG352901
EST:     CCACGGATATACATTGGATGCATGAAATCTGGGCCTGTCCTATCCCAAAA                         AGGGGTAAGGTACCATGAACCTGAGTACTGGAAATTTGGAGAGGCTGGAAA
genomic: CCACGGATATACATTGGATGCATGAAATCTGGGCCTGTCCTATCCCAAAAgtgagaaatg ... tttgttgcagAGGGGTAAGGTACCATGAACCTGAGTACTGGAAATTTGGAGAGGCTGGAAA