1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CTGGTGACTCCTCTAAGAGTTACAGTACAGCCAACAATGGAATTCCAAAAACAAAGACAGACAGTTTAGATGCATTGAAAAAAGATCCTGAAGCTGTCAGgtagttagcatttttttataaagtttctaagcattttatgtttgttttcaatttaacgattggtctacaaaagatttacattcttttttttcttttctttttttag
species | Glycine max |
transcript | GLYMA12G10270.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: ACAAAGACAGACAGTTTAGATGCATTGAAAAAAGATCCTGAAGCTGTCAG ATCATTCCAAAACTTTATTTCAAATACCGATCCTGCCACACTGGCTTCTTTEST: gi|11412882|gb|BF424893.1|BF424893
genomic: ACAAAGACAGACAGTTTAGATGCATTGAAAAAAGATCCTGAAGCTGTCAGgtagttagca ... ctttttttagATCATTCCAAAACTTTATTTCAAATACCGATCCTGCCACACTGGCTTCTTT
EST: ACAAAGACAGACAGTTTAGATGCATTGAAAAAAGATCCTGAAGCTGTCAG ATCATTCCAAAACTTTATTTCAAATACCGATCCTGCCACACTGGCTTCTTTEST: gi|18730098|gb|BM525680.1|BM525680
genomic: ACAAAGACAGACAGTTTAGATGCATTGAAAAAAGATCCTGAAGCTGTCAGgtagttagca ... ctttttttagATCATTCCAAAACTTTATTTCAAATACCGATCCTGCCACACTGGCTTCTTT
EST: ACAAAGACAGACAGTTTAGATGCATTGAAAAAAGATCCTGAAGCTGTCAG ATCATTCCAAAACTTTATTTCAAATACCGATCCTGCCACACTGGCTTCTTT
genomic: ACAAAGACAGACAGTTTAGATGCATTGAAAAAAGATCCTGAAGCTGTCAGgtagttagca ... ctttttttagATCATTCCAAAACTTTATTTCAAATACCGATCCTGCCACACTGGCTTCTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGGTGACTCCTCTAAGAGTTACAGTACAGCCAACAATGGAATTCCAAAAACAAAGACAGACAGTTTAGATGCATTGAAAAAAGATCCTGAAGCTGTCAGgtagttagcatttttttataaagtttctaagcattttatgtttgttttcaatttaacgattggtctacaaaagatttacattcttttttttcttttctttttttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG