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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACCTAACCTGCACATGGGCCATTTAGCTTGGGCCGATGCATTTGTTGTCACAGCCGATTCAGTTAGCATGATAAGTGAGGCATGCAGCACTGGgtatggttgtatagaagtatttctattattagaatgattttatttaattgctcttgatacaagtatctaatattatgttatcaaattatcttgttctacccccag

Basic information

species Glycine max
transcript GLYMA12G09690.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G09690.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv06s0080g00830.t01 (Vitis vinifera), 5'ss of exon 8
GACCTAACCTGCACATGGGCCATTTAGCTTGGGCCGATGCATTTGTTGTCACAGCCGATTCAGTTAGCATGATAAGTGAGGCATGCAGCACTGGgtatggttgtatagaagt-atttctattattag-aatgattt----tatttaattgctcttgatacaagtatct------aatattatgtta--tcaaattatcttgttctacccccag-----------------------------
 ||| || |  |||||||| ||| |||||||||| ||||| |||||||||||||| |||||||| || |||||||||||||| |||||||| ||||||| ||    |||| | |   |||| |||    || ||||     || |   || |||   |     | ||        |||| ||  |   | | ||| |||| || ||   | |                              
AACCAAATCCACACATGGGACATCTAGCTTGGGCTGATGCTTTTGTTGTCACAGCAGATTCAGTGAGTATGATAAGTGAGGCTTGCAGCACAGGgtatgcttcagaagaatttacccctatgattgatgataatttggagcatcttgatgttctctttttctttttccttttaggatatgatacttgtttatattctcttattatattgcaatattagttatttcaatttttgttgctgtag

upper sequence: GLYMA12G09690.1 (Glycine max), 5'ss of exon 8
lower sequence: PP1S82_141V6.1 (Physcomitrella patens), 5'ss of exon 8
GACCTAACCTGCACATGGGCCATTTAGCTTGGGCCGATGCATTTGTTGTCACAGCCGATTCAGTTAGCATGATAAGTGAGGCATGCAGCACTGGgtatgg------ttgtatagaa-----gtatt-tctattattagaatgatttta---tttaattgctcttgatacaa-gtatctaatatta--tgttatcaaattatctt-gttctacccccag--------------------------------------------------------
| || |||| |||| | || ||| | || ||||  |||||||||||||||||||| ||||| ||||| ||| | || || ||||||||||| |||||||       ||  ||||||      |||| | |  | || | ||  |  ||   |  ||||| |  ||     |  |   || |  |   | ||| |||   ||||| |  |||                                                               
GTCCAAACCCGCACCTTGGACATCTCGCATGGGGGGATGCATTTGTTGTCACAGCTGATTCTGTTAGTATGTTGAGCGAAGCATGCAGCACAGGgtatgtgacttttttaatagaattggcatattgtgtgctgttcgtatcctcataacctcaaattgatggtggggttatatgcatagttctggttattaacaacaaatctttgacctagttgttacttttaaactcttgtaatcatttccagttttattgccaccggtctgctgtgaacag