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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGTCTATGCTAAAACAGACATAACTGCTGGGTCAAAAGGCATTACTGCATTCATCATTGAGAAGGGAATGCCTGGgtaattgctctaaatcttgacaacaagttatacaatattaagtggacaaacctctatatttcaacttagttaatttttaggcaataatgtgaccacttgc...

Basic information

species Glycine max
transcript GLYMA12G07570.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G07570.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os05g03480.2 (Oryza sativa), 5'ss of exon 7
GTTGTCTATGCTAAAACAGACATAACTGCTGGGTCAAAAGGCATTACTGCATTCATCATTGAGAAGGGAATGCCTGGgtaattgctctaaatcttgacaacaagttatacaatattaagtggacaaacctctata---tttcaacttagttaatttttaggcaataatgtgaccacttgc
||||| ||||| |||||||| ||| ||||||| |||||||| || || || ||||| ||||||||||| ||||| ||||||  |  |||   | | ||     ||||| ||  ||      || |     |||||   ||        || ||    || |  |||   |||   | || 
GTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGGgtaaa-gaactactccatcacctattgttatgcatgatcgt-cagatatgttactataatattctggtcatgtaaacaaatatgagatag-atgatatcatga

upper sequence: GLYMA12G07570.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv06s0004g03140.t01 (Vitis vinifera), 5'ss of exon 8
GTTGTCTATGCTAAAACAGACATAACTGCTGGGTCAAAAGGCATTACTGCATTCATCATTGAGAAGGGAATGCCTGGgtaattgctctaaatcttgacaacaagttatacaatattaagtggacaaacctctatatttcaacttagttaatttttaggcaataatgtgaccacttgc-
||||| ||||| ||||| || || || |||   |||||||| ||||| ||||| ||||| |||||||||||||||||||| |||| | || ||| |        |  |  || || || ||    ||     | ||  |||    ||   |  |    |       |  | |||||  
GTTGTTTATGCGAAAACGGATATTACAGCTCATTCAAAAGGAATTACAGCATTTATCATCGAGAAGGGAATGCCTGGgtacttgcaccaattctggtttgtttatcttctaacat-aattgtgagaaaaaaaaaatgacaagggggtacctgatatccctgatgcctatcaacttgaa