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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGATCCTTCTCAAAAGAATCAACTTCTTATTTTAAAGTTTCTTCCACTCATGATTGGCTACTTCTCATTATCTGTCCCATCTGGACTAACAATTTACTGgttagtttttcagaaactatattaaaaccatcctttctagccaataaattcttattttttatgattttgctataacttcaaacattctttgctttattat...

Basic information

species Glycine max
transcript GLYMA12G06920.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G06920.1 (Glycine max), 5'ss of exon 8
lower sequence: AT2G28800.3 (Arabidopsis thaliana), 5'ss of exon 8
CAGATCCTTCTCAAAAGAATCAACTTCTTATTTTAAAGTTTCTTCCACTCATGATTGGCTACTTCTCATTATCTGTCCCATCTGGACTAACAATTTACTGgttagtttttcagaaactatattaaaaccatcctttctagccaataaattcttattttttatgattttgctata---acttcaaacattctttgctttattat-------
    |||| | || ||||||   |||||| |||| |||||||||||||||||||| || |||||  |||| ||||||||||| |||||| | ||||||||||| ||||  |      | |  |  || | ||   |||| |   |  || | |    || ||    |   || |   | |  ||  |   ||| || || ||        
----TCCTGCACAGAAGAATACGCTTCTTGTTTTCAAGTTTCTTCCACTCATGATCGGTTACTTTGCATTGTCTGTCCCATCAGGACTATCTATTTACTGGTTGgtttccc------tctccttgaaacttctcatctaactgttttatccatgcccttgatctactcattaaatggagtataagaaagattttctctagtaattaacct

upper sequence: GLYMA12G06920.1 (Glycine max), 5'ss of exon 8
lower sequence: AT2G28800.4 (Arabidopsis thaliana), 5'ss of exon 7
CAGATCCTTCTCAAAAGAATCAACTTCTTATTTTAAAGTTTCTTCCACTCATGATTGGCTACTTCTCATTATCTGTCCCATCTGGACTAACAATTTACTGgttagtttttcagaaactatattaaaaccatcctttctagccaataaattcttattttttatgattttgctata---acttcaaacattctttgctttattat---
  |||||| | || ||||||   |||||| |||| |||||||||||||||||||| || |||||  |||| ||||||||||| |||||| | ||||||||||| ||||  |      | |  |  || | ||   |||| |   |  || | |    || ||    |   || |   | |  ||  |   ||| || || ||    
ATGATCCTGCACAGAAGAATACGCTTCTTGTTTTCAAGTTTCTTCCACTCATGATCGGTTACTTTGCATTGTCTGTCCCATCAGGACTATCTATTTACTGgttggtttccc------tctccttgaaacttctcatctaactgttttatccatgcccttgatctactcattaaatggagtataagaaagattttctctagtaatta

upper sequence: GLYMA12G06920.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv06s0004g04460.t01 (Vitis vinifera), 5'ss of exon 8
CAGATCCTTCTCAAAAGAATCAACTTCTTATTTTAAAGTTTCTTCCACTCATGATTGGCTACTTCTCATTATCTGTCCCATCTGGACTAACAATTTACTGgttagtttttcagaaactatattaaaac--catcctttctagccaataaatt-cttattttttatgattttgctataacttcaaacattctttgctttattat
  ||||| ||||||||||||  ||||||| |||| ||||||||||||||||||||||| ||||| ||  ||||||||||||| ||| || |||||||||||||||||| | |  |||||| ||       ||||| |         || ||| |||    || ||||    | || | |||  |  | |   ||| || |   
ATGATCCATCTCAAAAGAATACACTTCTTGTTTTCAAGTTTCTTCCACTCATGATTGGTTACTTTTCTCTATCTGTCCCATCAGGATTATCAATTTACTGgttagtttctgattaactatttttgtctttcatccatgtcttatgctacattacttggacttaatgaacaggata-atcttagagaagtacatgcattgtg--

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23064105|gb|BU578878.1|BU578878
EST:     ATGATTGGCTACTTCTCATTATCTGTCCCATCTGGACTAACAATTTACTG                         GTTTATAAACAATGTCCTGAGCATTTTCTCAACAAGTATGGTTGCGAAAAT
genomic: ATGATTGGCTACTTCTCATTATCTGTCCCATCTGGACTAACAATTTACTGgttagttttt ... cttttactagGTTTATAAACAATGTCCTGAGCA-CAGCTCAACAAGTATGGTTGCGAAAAT
EST: gi|31469715|gb|CD411743.1|CD411743
EST:     ATGATTGGCTACTTCTCATTATCTGTCCCATCTGGACTAACAATTTACTG                         GTTTATAAACAATGTCCTGAGCACAGCTCAACAAGTATGGTTGCGAAAATT
genomic: ATGATTGGCTACTTCTCATTATCTGTCCCATCTGGACTAACAATTTACTGgttagttttt ... cttttactagGTTTATAAACAATGTCCTGAGCACAGCTCAACAAGTATGGTTGCGAAAATT
EST: gi|23063997|gb|BU578770.1|BU578770
EST:     ATGATTGGCTACTTCTCATTATCTGTCCCATCTGGACTAACAATTTACTG                         GTTTATAAACAATGTCCTGAGCACAGCTCAACAAGTATGGTTGCGAAAATT
genomic: ATGATTGGCTACTTCTCATTATCTGTCCCATCTGGACTAACAATTTACTGgttagttttt ... cttttactagGTTTATAAACAATGTCCTGAGCACAGCTCAACAAGTATGGTTGCGAAAATT
EST: gi|193525562|gb|FK478393.1|FK478393
EST:     ATGATTGGCTACTTCTCATTATCTGTCCCATCTGGACTAACAATTTACTG                         GTTTATAGACAATGTCCTGAGCACAGCTCAACAAGTATGGTTGCGAAAATT
genomic: ATGATTGGCTACTTCTCATTATCTGTCCCATCTGGACTAACAATTTACTGgttagttttt ... cttttactagGTTTATAAACAATGTCCTGAGCACAGCTCAACAAGTATGGTTGCGAAAATT
EST: gi|7926340|gb|AW832366.1|AW832366
EST:     GTCCCATCTGGACTAACAATTTACTG                         GTTTATAAACAATGTCCTGAGCACAGCTCAACAAGTATGGTTGCGAAAATT
genomic: GTCCCATCTGGACTAACAATTTACTGgttagttttt ... cttttactagGTTTATAAACAATGTCCTGAGCACAGCTCAACAAGTATGGTTGCGAAAATT
EST: gi|5760152|gb|AI965515.1|AI965515
EST:     ATGATTGGCTACTTCTCATTATCTGTCCCATCTGGACTAACAATTTACTG                         GTTTATAAACAATGTCCTGAGCACAGCTCAACAAGTATGGTTGCGAAAATT
genomic: ATGATTGGCTACTTCTCATTATCTGTCCCATCTGGACTAACAATTTACTGgttagttttt ... cttttactagGTTTATAAACAATGTCCTGAGCACAGCTCAACAAGTATGGTTGCGAAAATT
EST: gi|22930126|gb|BU547265.1|BU547265
EST:     CTGTCCCATCTGGACTAACAATTTACTG                         GTTTATAAACAATGTCCTGAGCACAGCTCAACAAGTATGGTTGCGAAAATT
genomic: CTGTCCCATCTGGACTAACAATTTACTGgttagttttt ... cttttactagGTTTATAAACAATGTCCTGAGCACAGCTCAACAAGTATGGTTGCGAAAATT
EST: gi|10233625|gb|BE802513.1|BE802513
EST:     ATGATTGGCTACTTCTCATTATCTGTCCCATCTGGACTAACAATTTACTG                         GTTTATAAACAATGTCCTGAGCACAGCTCAACACGTATGGCTGCGAAAATA
genomic: ATGATTGGCTACTTCTCATTATCTGTCCCATCTGGACTAACAATTTACTGgttagttttt ... cttttactagGTTTATAAACAATGTCCTGAGCACAGCTCAACAAGTATGGTTGCGAAAATT
EST: gi|20498706|gb|BQ273636.1|BQ273636
EST:     GGCTACTTCTCATTATCTGTCCCATCTGGACTAACAATTTACTG                         GTTTATAAACAATGTCCTGAGCACAGCTCAACAAGTATGGTTGCGAAAATT
genomic: GGCTACTTCTCATTATCTGTCCCATCTGGACTAACAATTTACTGgttagttttt ... cttttactagGTTTATAAACAATGTCCTGAGCACAGCTCAACAAGTATGGTTGCGAAAATT
EST: gi|10844370|gb|BF067669.1|BF067669
EST:     ATGATTGGCTACTTCTCATTATCTGTCCCATCTGGACTAACAATTTACTG                         GTTTATAAACAATGTCCTGAGCACAGCTCAACAAGTATGGTTGCGAAAATT
genomic: ATGATTGGCTACTTCTCATTATCTGTCCCATCTGGACTAACAATTTACTGgttagttttt ... cttttactagGTTTATAAACAATGTCCTGAGCACAGCTCAACAAGTATGGTTGCGAAAATT
EST: gi|120493132|gb|EH221299.1|EH221299
EST:     ATGATTGGCTACTTCTCATTATCTGTCCCATCTGGACTAACAATTTACTG                         GTTTATAAACAATGTCCTGAGCACAGCTCAACAAGTATGGTTGCGAAAATT
genomic: ATGATTGGCTACTTCTCATTATCTGTCCCATCTGGACTAACAATTTACTGgttagttttt ... cttttactagGTTTATAAACAATGTCCTGAGCACAGCTCAACAAGTATGGTTGCGAAAATT