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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACAACAGAGGCTTTATCAGTGAATCGAGCATTTCGTGCTATTCGTCGTTCTGATGTTGTTGCTCTTGTCATCGAGGCCATGGCTTGTATCACAGAACAGgttcgtgataatgcttttatttgttacatgaaaatcagattggttttcatcatatatagtattactttttgccccacttaactatttaagtgtctgttgaag

Basic information

species Glycine max
transcript GLYMA12G06150.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G06150.1 (Glycine max), 5'ss of exon 8
lower sequence: AT3G12080.2 (Arabidopsis thaliana), 5'ss of exon 8
TACAACAGAGGCTTTATCAGTGAATCGAGCATTTCGTGCTATTCGTCGTTCTGATGTTGTTGCTCTTGTCATCGAGGCCATGGCTTGTATCACAGAACAGgt-tcgtgataatgcttttatttgttacatgaaaatcagattggttttcatcatatatagtattactttttgccccacttaactatttaagtgtctgttgaag-
 || ||||||||  | ||||||||||| |||||||| || ||||||||||||||||||||||| |||||||| || || ||||| || || ||||| ||||| ||    || |   |     || |   ||    ||  ||| |   |  |     || | |     |||||    |   |    || ||   |    |  |  
CACTACAGAGGCCATGTCAGTGAATCGTGCATTTCGAGCAATTCGTCGTTCTGATGTTGTTGCCCTTGTCATTGAAGCTATGGCATGCATAACAGAGCAGgtatctcactagtaactgacactgatgactgtt--tctcattagcaattgtagagcat-gcagactgttttggtatagacaga-gttgaaccatacagtataat

upper sequence: GLYMA12G06150.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv06s0004g02070.t01 (Vitis vinifera), 5'ss of exon 9
TACAACAGAGGCTTTATCAGTGAATCGAGCATTTCGTGCTATTCGTCGTTCTGATGTTGTTGCTCTTGTCATCGAGGCCATGGCTTGTATCACAGAACAGgttcgtgataatgcttttatttgttacatgaaaatcagat-tggttttcatcatatatagtattactttttgccccacttaactatttaagtgtctgttgaag---
 |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||| ||||||||||||||||| | |  |        | ||  | |||     ||    | |||||||||       | ||   | || ||||   |   ||   ||| |||  | ||    |   
CACAACAGAGGCTTTATCAGTTAATCGAGCATTTCGTGCTATTCGTCGTTCTGATGTTGTGGCTCTTGTGATTGAGGCCATGGCCTGTATCACAGAACAGgtactttgtccatagggttttgataacacagttatggtgtctggttttcactgc---tggtgcaaattcttgc---atggaaaagttttagttacagtgtgggaat