Sequence
atgc intronic sequence ATGC exonic sequenceGCATCACCAACACGGAAGATGGCAAGCAAGGATTGGCAGAGTTGCAGGAAACAAAGATCTTTACTTGGGAACTTTCAgtaagacaaatttaataatcacatgcaaagaatgttacactaaaatagaacttcaaattaaccacttattgtttgtagcaaaaaatatctgttaagataa...
Basic information
species | Glycine max |
transcript | GLYMA12G06010.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA12G06010.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv06s0004g01800.t01 (Vitis vinifera), 5'ss of exon 7
GCATCACCAACACGGAAGATGGCAAGCAAGGATTGGCAGAGTTGCAGGAAACAAAGATCTTTACTTGGGAACTTTCAgtaagacaaatttaataa---tcacatgcaaagaatgttacactaaaatagaacttcaaattaaccacttattgtttgtagcaaaaaata-tctgttaagataa-----------------------------------------
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GCATCATCAACATGGAAGATGGCAGGCAAGGATTGGAAGAGTTGCCGGAAACAAAGACCTCTATTTGGGAACTTTTAgtaag-tagtttgaacaaggaccatttcttttaagtcttctacttgcaaacatctagatattggcaccaatttaaccgaattacaggataatttacaagaacaaggtgcaattattcttgataaatcccaaaactgactgtgtag
upper sequence: GLYMA12G06010.1 (Glycine max), 5'ss of exon 8
lower sequence: EFJ16224 (Selaginella moellendorffii), 5'ss of exon 5
GCATCACCAACACGGAAGATGGCAAGCAAGGATTGGCAGAGTTGCAGGAAACAAAGATCTTTACTTGGGAACTTTCAgtaagaca--aatttaataatcacatgcaaa-gaatgttacactaaaatagaacttcaaattaaccacttattgtttgtagcaaaaaatatctgttaagataa
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GCATCACCAGCAAGGAAGATGGCAAGCTCGGATCGGACGAGTTGCCGGGAATAAAGATCTGTACCTCGGAACTTTCAgtaagttttcgatcgaaagctttcaagttcgtaaatgttttccttttttcga---tgaaag------------------------------------------
upper sequence: GLYMA12G06010.1 (Glycine max), 5'ss of exon 8
lower sequence: EFJ17692 (Selaginella moellendorffii), 5'ss of exon 5
GCATCACCAACACGGAAGATGGCAAGCAAGGATTGGCAGAGTTGCAGGAAACAAAGATCTTTACTTGGGAACTTTCAgtaagacaaatttaataatcacatgcaaagaatgttacactaaaatagaacttcaaattaaccacttattgtttgtagcaaaaaatatctgttaagataa
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GCATCACCAGCAGGGAAGATGGCAAGCTCGGATCGGACGAGTTGCGGGGAATAAAGATCTGTACCTCGGAACTTTCAgtaagtt---ttcgatcgaaagctttcaagttcgt-aaattttttccttttttcgatgaaag--------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|26045627|gb|CA783156.1|CA783156EST: AAGGATTGGCAGAGTTGCAGGAAACAAAGATCTTTACTTGGGAACTTTCA GTACTGAGGAAGAGGCTGCAGAAGCATACGACATAGCAGCGATAAAGTTCA
genomic: AAGGATTGGCAGAGTTGCAGGAAACAAAGATCTTTACTTGGGAACTTTCAgtaagacaaa ... ttcattacagGTACTGAGGAAGAGGCTGCAGAAGCATACGACATAGCAGCGATAAAGTTCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
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GCATCACCAACACGGAAGATGGCAAGCAAGGATTGGCAGAGTTGCAGGAAACAAAGATCTTTACTTGGGAACTTTCAgtaagacaaatttaataatcacatgcaaagaatgttacactaaaatagaacttcaaattaaccacttattgtttgtagcaaaaaatatctgttaagataa
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