1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
ATGATTTATATGCTTCCACTAGGTTTTGCGGTTTCAAAGGCTAGAACTGGACATAGTTGGGGAACACAGTTTGACTCTTTCTGGTGCTGCTATGGAACAGgtatacaattgttttgtttatatacttccgaaactgcattctttttcaactccaccatacttttatcaatcatttaatctcaatttctttttctgtttattag
species | Glycine max |
transcript | GLYMA12G05980.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: ACATAGTTGGGGAACACAGTTTGACTCTTTCTGGTGCTGCTATGGAACAG GAATTGAATCATTCTCAAAGCTGGGGGATTCTATCTATTTTGAAGAGGAAGEST: gi|193519397|gb|FK477514.1|FK477514
genomic: ACATAGTTGGGGAACACAGTTTGACTCTTTCTGGTGCTGCTATGGAACAGgtatacaatt ... tgtttattagGAATTGAATCATTCTCAAAGCTGGGGGATTCTATCTATTTTGAAGAGGAAG
EST: ACATAGTTGGGGAACACAGTTTGACTCTTTCTGGTGCTGCTATGGAACAG GAATTGAATCATTCTCAAAGCTGGGGGATTCTATCTATTTTGAAGAGGAAGEST: gi|7693350|gb|AW761444.1|AW761444
genomic: ACATAGTTGGGGAACACAGTTTGACTCTTTCTGGTGCTGCTATGGAACAGgtatacaatt ... tgtttattagGAATTGAATCATTCTCAAAGCTGGGGGATTCTATCTATTTTGAAGAGGAAG
EST: GGGGAACACAGTTTGACTCTTTCTGGTGCTGCTATGGAACAG GAATTGAATCATTCTCAAAGCTGGGGGATTCTATCTATTTTGAAGAGGAAGEST: gi|208190509|gb|GD992669.1|GD992669
genomic: GGGGAACACAGTTTGACTCTTTCTGGTGCTGCTATGGAACAGgtatacaatt ... tgtttattagGAATTGAATCATTCTCAAAGCTGGGGGATTCTATCTATTTTGAAGAGGAAG
EST: ACATAGTTGGGGAACACAGTTTGACTCTTTCTGGTGCTGCTATGGAACAG GAATTGAATCATTCTTAAAGCTGGGGGATTCTATCTATTTTGAAGAAGGAA
genomic: ACATAGTTGGGGAACACAGTTTGACTCTTTCTGGTGCTGCTATGGAACAGgtatacaatt ... tgtttattagGAATTGAATCATTCTCAAAGCTGGGGGATTCTATCTATTTTGAAGA-GGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGATTTATATGCTTCCACTAGGTTTTGCGGTTTCAAAGGCTAGAACTGGACATAGTTGGGGAACACAGTTTGACTCTTTCTGGTGCTGCTATGGAACAGgtatacaattgttttgtttatatacttccgaaactgcattctttttcaactccaccatacttttatcaatcatttaatctcaatttctttttctgtttattag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT