1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GACTGCAACCAAGGTGAGTGAGATGCTGGGAAATGTCAATACAAGTAGTGCTCTTTCAGCTTTTGAAAAGATGGAAGAGAAAGgtaagaaaattcattgagtctactctttggctgtttggatatataaataatacttctatataacctggcctgtgcttaatgtgtacccttaaccacatac...
species | Glycine max |
transcript | GLYMA12G05330.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TGTCAATACAAGTAGTGCTCTTTCAGCTTTTGAAAAGATGGAAGAGAAAG TGTTGGCAATGGAGTCCCAAGCTGAAGCTCTTGGCCAGTTGACAAGTGATGEST: gi|19053083|gb|BM731750.1|BM731750
genomic: TGTCAATACAAGTAGTGCTCTTTCAGCTTTTGAAAAGATGGAAGAGAAAGgtaagaaaat ... atcttgttagTGTTGGCAATGGAGTCCCAAGCTGAAGCTCTTGGCCAGTTGACAAGTGATG
EST: TGTCAATACAAGTAGTGCTCTTTCAGCTTTTGAAAAGATGGAAGAGAAAG TGTTGGCAATGGAGTCCCAAGCTGAAGCTCTTGGCCAGTTGACAAGTGATGEST: gi|5509430|gb|AI855988.1|AI855988
genomic: TGTCAATACAAGTAGTGCTCTTTCAGCTTTTGAAAAGATGGAAGAGAAAGgtaagaaaat ... atcttgttagTGTTGGCAATGGAGTCCCAAGCTGAAGCTCTTGGCCAGTTGACAAGTGATG
EST: TGTCAATACAAGTAGTGCTCTTTCAGCTTTTGAAAAGATGGAAGAGAAAG TGTTGGCAATGGAGTCCCAAGCTGAAGCTCTTGGCCAGTTGACAAGTGATGEST: gi|120533309|gb|EH261442.1|EH261442
genomic: TGTCAATACAAGTAGTGCTCTTTCAGCTTTTGAAAAGATGGAAGAGAAAGgtaagaaaat ... atcttgttagTGTTGGCAATGGAGTCCCAAGCTGAAGCTCTTGGCCAGTTGACAAGTGATG
EST: TGTCAATACAAGTAGTGCTCTTTCAGCTTTTGAAAAGATGGAAGAGAAAG TGTTGGCAATGGAGTCCCAAGCTGAAGCTCTTGGCCAGTTGACAAGTGATG
genomic: TGTCAATACAAGTAGTGCTCTTTCAGCTTTTGAAAAGATGGAAGAGAAAGgtaagaaaat ... atcttgttagTGTTGGCAATGGAGTCCCAAGCTGAAGCTCTTGGCCAGTTGACAAGTGATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACTGCAACCAAGGTGAGTGAGATGCTGGGAAATGTCAATACAAGTAGTGCTCTTTCAGCTTTTGAAAAGATGGAAGAGAAAGgtaagaaaattcattgagtctactctttggctgtttggatatataaataatacttctatataacctggcctgtgcttaatgtgtacccttaaccacatac
- - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA