Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACTAGCCGAGAATTAACACCGGCAATTACTGTTCTTCAGCTTTTCTTAAGTTCATCTAAGCCAGTCTTGAGATTTGCCGCTGTCCGCACCTTGAACAAGgttaactttttttaattacttaaatttcagagaaaatactttttcatgcttttgttaaatttgacataggatacatgacagcctccattctgaagtgagc...

Basic information

species Glycine max
transcript GLYMA12G04820.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G04820.1 (Glycine max), 5'ss of exon 8
lower sequence: AT4G34450.1 (Arabidopsis thaliana), 5'ss of exon 7
AACTAGCCGAGAATTAACACCGGCAATTACTGTTCTTCAGCTTTTCTTAAGTTCATCTAAGCCAGTCTTGAGATTTGCCGCTGTCCGCACCTTGAACAAGgttaac--tttttttaattacttaaatttcagagaaaatactttttcatgcttttgttaaatttgacataggatacatgacagcctccattctgaag-tgagc----------------------------------------
 || ||||||||| | || || ||||| |||||||||||||| || || |||||  | |  ||||| |||||||||||||||||||| ||  |||||||||||  |  |  ||| || |  |    ||  | |   |   |    | ||| ||||  ||   | |  |   ||| ||| |   |||  ||  ||| | ||||                                         
GACAAGCCGAGAACTGACTCCAGCAATCACTGTTCTTCAGCTCTTTTTGAGTTCCCCCAGACCAGTGTTGAGATTTGCCGCTGTCCGGACTCTGAACAAGgtttgcaatgctttcaactgttctctttgtacattgacaccgaaatgatg-ttttactattctgggta---gattcatcattacctttatcatgaggatgaggagatatttcactgtatactaaacacaagtttgaaccacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10710301|gb|BF010025.1|BF010025
EST:     GTTCATCTAAGCCAGTCTTGAGATTTGCCGCTGTCCGCACCTTGAACAAG                         GTGGCAATGACACATCCGATGGCAGTCACTAACTGCAATATTGATATGGAA
genomic: GTTCATCTAAGCCAGTCTTGAGATTTGCCGCTGTCCGCACCTTGAACAAGgttaactttt ... aactttgcagGTGGCAATGACACATCCGATGGCAGTCACTAACTGCAATATTGATATGGAA