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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACCATGCCACCACCTCCGTCATATGAAGAAGTGAATGGTGTCTATGCTTCTCCGACACACAATGGATCAACAGATAGCATGGGTTACTTCTTGGGAGAGgttggcatgagattgtttctacttttttgaacacaggggaacacttgcagatattaaatattgaatacaggttactgctttcttcttttgtaacttttgctcttcttgcag

Basic information

species Glycine max
transcript GLYMA12G04210.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G04210.1 (Glycine max), 5'ss of exon 8
lower sequence: AT4G34660.2 (Arabidopsis thaliana), 5'ss of exon 8
CACCATGCCACCACCTCCGTCATATGAAGAAGTGAATGGTGTCTATGCTTCTCCGACACACAATGGATCAACAGATAGCATGGGTTACTTCTTGGGAGAGgttggcatgagattgtttc-tacttttttgaacacaggggaacacttgcagatattaaatattgaatacaggttactgctttcttcttttgtaacttttgctcttcttgcag
||  ||||| |||||||| |||||||| ||||  ||||| || | ||| |||| ||  ||  |    |||||||||||||||||||||||||| ||||||||  || |   | | |||  ||| ||  |           |||  | |   |||||   || | ||   |    |     |  ||   || ||| || | |           
CAGTATGCCGCCACCTCCATCATATGAGGAAGCTAATGGAGTGTTTGCATCTCAGATGCATGACACGTCAACAGATAGCATGGGTTACTTCTTAGGAGAGgtatgcttttcagtctttaataccttccttttagagttaaaactttggtttatattgg-tagtaaaagtat-caaagagataattggattataagttctcca----------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193304265|gb|FK270294.1|FK270294
EST:     CTCCGACACACAATGGATCAACAGATAGCATGGGTTACTTCTTGGGAGAG                         GTTTTATTTCCATATTCTGCTGTATCTGAAGTGGAGCTAAATCTATCA
genomic: CTCCGACACACAATGGATCAACAGATAGCATGGGTTACTTCTTGGGAGAGgttggcatga ... cttcttgcagGTTTTATTTCCATATTCTGCTGTATCTGAAGTGGAGCTAAATCTATCA
EST: gi|193412302|gb|FK381229.1|FK381229
EST:     CTCCGACACACAATGGATCAACAGATAGCATGGGTTACTTCTTGGGAGAG                         GTTTTTATTTCCATATT
genomic: CTCCGACACACAATGGATCAACAGATAGCATGGGTTACTTCTTGGGAGAGgttggcatga ... cttcttgcagGTTTT-ATTTCCATATT
EST: gi|193322310|gb|FK289008.1|FK289008
EST:     CTCCGACACACAATGGATCAACAGATAGCATGGGTTACTTCTTGGGAGAG                         GTTTTATTTCCATATT
genomic: CTCCGACACACAATGGATCAACAGATAGCATGGGTTACTTCTTGGGAGAGgttggcatga ... cttcttgcagGTTTTATTTCCATATT