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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGTTGCTGAATCTGTTAAGGAAGACTTTGGCAGTATAGATATCCTTGTGCACTCACTTGCCAATGGACCAGAGgtacgataaatacattaataataagcattgaagttcctttatgcatttggtatctggttttaataagaatttaactctgatgtag

Basic information

species Glycine max
transcript GLYMA12G03060.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G03060.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv06s0004g01310.t01 (Vitis vinifera), 5'ss of exon 7
GAAGTTGCTGAATCTGTTAAGGAAGACTTTGGCAGTATAGATATCCTTGTGCACTCACTTGCCAATGGACCAGAGgtacgataaatacattaataataagcattgaagttcctttatgcatttggtatctggttttaataagaatttaactctgatgtag
||||| || ||||| || ||  | || |||||||| || ||||||||||||||||||||||||||||| || |||||||  |   |    |  |  | | | |   ||||      |   |||||||       || | ||| |   | |||| |  |||
GAAGTGGCCGAATCCGTGAAACAGGATTTTGGCAGCATCGATATCCTTGTGCACTCACTTGCCAATGGGCCGGAGgtactgt---tttgctggttgtgatcttatcagttgaccattcattttggtac------tttacaagtaaacatctcttaaatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17963692|gb|BM270438.1|BM270438
EST:     ACTTTGGCAGTATAGATATCCTTGTGCACTCACTTGCCAATGGACCAGAG                         GTGACCAAACCATTGTTGGAGACATCTCGGAATGGGTATCTTGCTGCAATA
genomic: ACTTTGGCAGTATAGATATCCTTGTGCACTCACTTGCCAATGGACCAGAGgtacgataaa ... tctgatgtagGTGACCAAACCATTGTTGGAGACATCTCGGAATGGGTATCTTGCTGCAATA
EST: gi|192301956|gb|FG995574.1|FG995574
EST:     ACTTTGGCAGTATAGATATCCTTGTGCACTCACTTGCCAATGGACCAGAG                         GTGACCAAACCATTGTTGGAGACATCTCGGAATGGGTATCTTGCTGCAATA
genomic: ACTTTGGCAGTATAGATATCCTTGTGCACTCACTTGCCAATGGACCAGAGgtacgataaa ... tctgatgtagGTGACCAAACCATTGTTGGAGACATCTCGGAATGGGTATCTTGCTGCAATA
EST: gi|16347093|gb|BI972688.1|BI972688
EST:     ACTTTGGCAGTATAGATATCCTTGTGCACTCACTTGCCAATGGACCAGAG                         GTGACCAAACCATTGTTGGAGACATCTCGGAATGGGTATCTTGCTGCAATA
genomic: ACTTTGGCAGTATAGATATCCTTGTGCACTCACTTGCCAATGGACCAGAGgtacgataaa ... tctgatgtagGTGACCAAACCATTGTTGGAGACATCTCGGAATGGGTATCTTGCTGCAATA