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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTGTGATGAAGTCTGCCAGATTAAATCATCTCTTCTAGAGGGAATTTTAGTGGTAAATTTCCTTGTCCATTTTTACAAGTGCAGTAGCTCGATGACCTgtgagttgtcttgttttttaattcctttttttttttgtttccttgatgagtaagttctatggtaccacaactatactctcgttgggcctgcttgggtaga...

Basic information

species Glycine max
transcript GLYMA12G02310.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G02310.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv06s0004g00060.t01 (Vitis vinifera), 5'ss of exon 8
----------------------------------------------ATTTGTGATGAAGTCTGCCAGATTAAATCATCTCTTCTAGAGGGAATTTTAGTGGTAAATTTCCTTGTCCATTTTTACAAGTGCAGTAGCTCGATGACCTgtgagttgtcttgttttttaattcctttttttttttgtttccttgatgagtaagttctatggtaccacaactatactctcgttgggcctgcttgggtaga
                                              |  ||||||||||| ||||||||||| ||||| ||||| |||||| ||||||| |||| ||||| | |     |||  | |   | |   ||| | |     | |||    ||  ||   | |  |  |  | |   | || |||    ||   ||                                            
GTTTCTTGCTGAAGGTACCTATGGAAATGGTTCAGCCAATTCCACAACCTGTGATGAAGTTTGCCAGATTAAGTCATCGCTTCTGGAGGGACTTTTAGTTgtaagtttccatatgatcctttctatg---attcaatcgctaatgctggtgtttctctgcattgctaatgttgatcatatgaatatctttgcactgttgtttg-------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254328978|gb|GR833350.1|GR833350
EST:     AGTGGTAAATTTCCTTGTCCATTTTTACAAGTGCAGTAGCTCGATGACCT                         GGTATAGTTTTGCTAATAATTTTGATATCGGGCCTTTGCTGCATGATGGGA
genomic: AGTGGTAAATTTCCTTGTCCATTTTTACAAGTGCAGTAGCTCGATGACCTgtgagttgtc ... gttaatccagGGTATAGTTTTGCTAATAATTTTGATATCGGGCCTTTGCTGCATGATGGGA