1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GTTCTCTTCTGGCCATGGAACTATTGGTATGTTCGCAGGCACCGGTGGACCGATTGGCATTTAGTTTCCTGATGTTCAGgtaaagctagttcgggtgtttatgttgatgaggcttttttgcatgttgtcgtcaaggtggattggtttgttgtttagtttattaaattttgatgtcggtttggtcttttttgtgcaacatttacag
species | Glycine max |
transcript | GLYMA12G01350.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TGTTCGCAGGCACCGGTGGACCGATTGGCATTTAGTTTCCTGATGTTCAG GAAGTGAAAGATGACTAAAGAAACCCGGACAGATATAATTGAGAATCACCGEST: gi|193541819|gb|FK496589.1|FK496589
genomic: TGTTCGCAGGCACCGGTGGACCGATTGGCATTTAGTTTCCTGATGTTCAGgtaaagctag ... acatttacagGAAGTGAAAGATGACTAAAGAAACCCGGACAGATATAATTGAGAATCACCG
EST: TGTTCGCAGGCACCGGTGGACCGATTGGCATTTAGTTTCCTGATGTTCAG GAAGTGAAAGATGACTAAAGAAACCCGGACAGATATAATTGAGAATCACCGEST: gi|9903216|gb|BE612184.1|BE612184
genomic: TGTTCGCAGGCACCGGTGGACCGATTGGCATTTAGTTTCCTGATGTTCAGgtaaagctag ... acatttacagGAAGTGAAAGATGACTAAAGAAACCCGGACAGATATAATTGAGAATCACCG
EST: TGTTCGCAGGCACCGGTGGACCGATTGGCATTTAGTTTCCTGATGTTCAG GAAGTGAAAGATGACTAAAGAAACCCGGACAGATATAATTGAGAATCACCGEST: gi|27445790|gb|CA952913.1|CA952913
genomic: TGTTCGCAGGCACCGGTGGACCGATTGGCATTTAGTTTCCTGATGTTCAGgtaaagctag ... acatttacagGAAGTGAAAGATGACTAAAGAAACCCGGACAGATATAATTGAGAATCACCG
EST: TGTTCGCAGGCACCGGTGGACCGATTGGCATTTAGTTTCCTGATGTTCAG GAAGTGAAAGATGACTAAAGAAACCCGGACAGATATAATTGAGAATCACCGEST: gi|27425986|gb|CA937506.1|CA937506
genomic: TGTTCGCAGGCACCGGTGGACCGATTGGCATTTAGTTTCCTGATGTTCAGgtaaagctag ... acatttacagGAAGTGAAAGATGACTAAAGAAACCCGGACAGATATAATTGAGAATCACCG
EST: TGTTCGCAGGCACCGGTGGACCGATTGGCATTTAGTTTCCTGATGTTCAG GAAGTGAAAGATGACTAAAGAAACCCGGACAGATATAATTGAGAATCACCGEST: gi|10846400|gb|BF069308.1|BF069308
genomic: TGTTCGCAGGCACCGGTGGACCGATTGGCATTTAGTTTCCTGATGTTCAGgtaaagctag ... acatttacagGAAGTGAAAGATGACTAAAGAAACCCGGACAGATATAATTGAGAATCACCG
EST: TGTTCGCAGGCACCGGTGGACCGATTGGCATTTAGTTTCCTGATGTTCAG GAAGTGAAAGATGACTAAAGAAACCCGGACAGATATAATTGAGAATCACCG
genomic: TGTTCGCAGGCACCGGTGGACCGATTGGCATTTAGTTTCCTGATGTTCAGgtaaagctag ... acatttacagGAAGTGAAAGATGACTAAAGAAACCCGGACAGATATAATTGAGAATCACCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTCTCTTCTGGCCATGGAACTATTGGTATGTTCGCAGGCACCGGTGGACCGATTGGCATTTAGTTTCCTGATGTTCAGgtaaagctagttcgggtgtttatgttgatgaggcttttttgcatgttgtcgtcaaggtggattggtttgttgtttagtttattaaattttgatgtcggtttggtcttttttgtgcaacatttacag
- - - - - - - - - - - - - - - - - - - - - GGTGGA