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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGTGTTTAACCTGCTACCAAATCTTAATGTTGCTGATCTTATCAAGGCTTTCGCAGgttaagatttgtgacttgtattatttgaatatcatatttttctagaatgtctctttttaattgttgatctgttgtacatatgtag

Basic information

species Glycine max
transcript GLYMA11G34980.1
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208311610|gb|GE109434.1|GE109434
EST:     TAACCTGCTACCAAATCTTAATGTTGCTGATCTTATCAAGGCTTTCGCAG                         TGAAAACCAATGATATGATGCTGGTAATATACCTCTCGTCTCTCATTAGAA
genomic: TAACCTGCTACCAAATCTTAATGTTGCTGATCTTATCAAGGCTTTCGCAGgttaagattt ... acatatgtagTGAAAACCAATGATATGATGCTGGTAATATACCTCTCGTCTCTCATTAGAA
EST: gi|207829987|gb|GD801903.1|GD801903
EST:     TAACCTGCTACCAAATCTTAATGTTGCTGATCTTATCAAGGCTTTCGCAG                         TGAAAACCAATGATATGATGCTGGTAATATACCTCTCGTCTCTCATTAGAA
genomic: TAACCTGCTACCAAATCTTAATGTTGCTGATCTTATCAAGGCTTTCGCAGgttaagattt ... acatatgtagTGAAAACCAATGATATGATGCTGGTAATATACCTCTCGTCTCTCATTAGAA
EST: gi|193469364|gb|FK437642.1|FK437642
EST:     CTTAATGTTGCTGATCTTATCAAGGCTTTCGCAG                         TGAAAACCAATGATATGATGCTGGTAATATACCTCTCGTCTCTCATTAGAA
genomic: CTTAATGTTGCTGATCTTATCAAGGCTTTCGCAGgttaagattt ... acatatgtagTGAAAACCAATGATATGATGCTGGTAATATACCTCTCGTCTCTCATTAGAA
EST: gi|58016090|gb|CX702832.1|CX702832
EST:     TAACCTGCTACCAAATCTTAATGTTGCTGATCTTATCAAGGCTTTCGCAG                         TGAAAACCAATGATATGATGCTGGTAATATACCTCTCGTCTCTCATTAGAA
genomic: TAACCTGCTACCAAATCTTAATGTTGCTGATCTTATCAAGGCTTTCGCAGgttaagattt ... acatatgtagTGAAAACCAATGATATGATGCTGGTAATATACCTCTCGTCTCTCATTAGAA
EST: gi|15662128|gb|BI699499.1|BI699499
EST:     TAACCTGCTACCAAATCTTAATGTTGCTGATCTTATCAAGGCTTTCGCAG                         TGAAAACCAATGATATGATGCTGGTAATATACCTCTCGTCTCTCATTAGAA
genomic: TAACCTGCTACCAAATCTTAATGTTGCTGATCTTATCAAGGCTTTCGCAGgttaagattt ... acatatgtagTGAAAACCAATGATATGATGCTGGTAATATACCTCTCGTCTCTCATTAGAA
EST: gi|254323157|gb|GR835765.1|GR835765
EST:     TAACCTGCTACCAAATCTTAATGTTGCTGATCTTATCAAGGCTTTCGCAG                         TGAAAACCAATGATATGATGCTGGTAATATACCTCTCGTCTCTCATTAGAA
genomic: TAACCTGCTACCAAATCTTAATGTTGCTGATCTTATCAAGGCTTTCGCAGgttaagattt ... acatatgtagTGAAAACCAATGATATGATGCTGGTAATATACCTCTCGTCTCTCATTAGAA
EST: gi|207684747|gb|GD664706.1|GD664706
EST:     TAACCTGCTACCAAATCTTAATGTTGCTGATCTTATCAAGGCTTTCGCAG                         TGAAAACCAATGATATGATGCTGGTA
genomic: TAACCTGCTACCAAATCTTAATGTTGCTGATCTTATCAAGGCTTTCGCAGgttaagattt ... acatatgtagTGAAAACCAATGATATGATGCTGGTA
EST: gi|193472484|gb|FK434869.1|FK434869
EST:     AATCTTAATGTTGCTGATCTTATCAAGGCTTTCGCAG                         TGAAAACCAATGATATGATGCTGGTAATATACCTCTCGTCTCTCATTAGAA
genomic: AATCTTAATGTTGCTGATCTTATCAAGGCTTTCGCAGgttaagattt ... acatatgtagTGAAAACCAATGATATGATGCTGGTAATATACCTCTCGTCTCTCATTAGAA
EST: gi|58017218|gb|CX703960.1|CX703960
EST:     TAACCTGCTACCAAATCTTAATGTTGCTGATCTTATCAAGGCTTTCGCAG                         TGAAAACCAATGATATGATGCTGGTAATATACCTCTCGTCTCTCATTAGAA
genomic: TAACCTGCTACCAAATCTTAATGTTGCTGATCTTATCAAGGCTTTCGCAGgttaagattt ... acatatgtagTGAAAACCAATGATATGATGCTGGTAATATACCTCTCGTCTCTCATTAGAA
EST: gi|208073938|gb|GD867771.1|GD867771
EST:     CTGCTACCAAATCTTAATGTTGCTGATCTTATCAAGGCTTTACGACAAAG                         TGAAAACCAATG
genomic: CTGCTACCAAATCTTAATGTTGCTGATCTTATCAAGGCTTT-CG-CA--Ggttaagattt ... acatatgtagTGAAAACCAATG
EST: gi|193662667|gb|FK603217.1|FK603217
EST:     CTTAATGTTGCTGATCTTATCAAGGCTTTCGCAG                         TGAAAACCAATGATATGATGCTGGTAATATACCTCTCGTCTCTCATTAGAA
genomic: CTTAATGTTGCTGATCTTATCAAGGCTTTCGCAGgttaagattt ... acatatgtagTGAAAACCAATGATATGATGCTGGTAATATACCTCTCGTCTCTCATTAGAA
EST: gi|193453916|gb|FK419545.1|FK419545
EST:     TGCTGATCTTATCAAGGCTTTCGCAG                         TGAAAACCAATGATATGATGCTGGTAATATACCTCTCGTCTCTCATTAGAA
genomic: TGCTGATCTTATCAAGGCTTTCGCAGgttaagattt ... acatatgtagTGAAAACCAATGATATGATGCTGGTAATATACCTCTCGTCTCTCATTAGAA
EST: gi|5058103|gb|AI736579.1|AI736579
EST:     TAACCTGCTACCANATCTTAATGTTGCTGATCTTATCAAGGCTNTCGCAG                         TGAAAACCAATGATATGATGCTGGTAATATACCTCTCGTCTCTCATTAGAA
genomic: TAACCTGCTACCAAATCTTAATGTTGCTGATCTTATCAAGGCTTTCGCAGgttaagattt ... acatatgtagTGAAAACCAATGATATGATGCTGGTAATATACCTCTCGTCTCTCATTAGAA
EST: gi|193497576|gb|FK460808.1|FK460808
EST:     TAACCTGCTACCAAATCTTAATGTTGCTGATCTTATCAAGGCTTTCGCAG                         TGAAAACCAATGATATGATGCTGGTAATATACCTCTCGTCTCTCATTAGAA
genomic: TAACCTGCTACCAAATCTTAATGTTGCTGATCTTATCAAGGCTTTCGCAGgttaagattt ... acatatgtagTGAAAACCAATGATATGATGCTGGTAATATACCTCTCGTCTCTCATTAGAA
EST: gi|58017413|gb|CX704155.1|CX704155
EST:     TAACCTGCTACCAAATCTTAATGTTGCTGATCTTATCAAGGCTTTCGCAG                         TGAAAACCAATGATATGATGCTGGTAATATACCTCTCGTCTCTCATTAGAA
genomic: TAACCTGCTACCAAATCTTAATGTTGCTGATCTTATCAAGGCTTTCGCAGgttaagattt ... acatatgtagTGAAAACCAATGATATGATGCTGGTAATATACCTCTCGTCTCTCATTAGAA
EST: gi|58023179|gb|CX709920.1|CX709920
EST:     TAACCTGCTACCAAATCTTAATGTTGCTGATCTTATCAAGGCTTTCGCAG                         TGAAAACCAATGATATGATGCTGGTAATATACCTCTCGTCTCTCATTAGAA
genomic: TAACCTGCTACCAAATCTTAATGTTGCTGATCTTATCAAGGCTTTCGCAGgttaagattt ... acatatgtagTGAAAACCAATGATATGATGCTGGTAATATACCTCTCGTCTCTCATTAGAA
EST: gi|207716253|gb|GD697559.1|GD697559
EST:     TAACCTGCTACCAAATCTTAATGTTGCTGATCTTATCAAGGCTTTCGCAG                         TGAAAACCAATGATATGATGCTGGTTAATATACCTCTCGTCTCTCATTAGA
genomic: TAACCTGCTACCAAATCTTAATGTTGCTGATCTTATCAAGGCTTTCGCAGgttaagattt ... acatatgtagTGAAAACCAATGATATGATGCTGGT-AATATACCTCTCGTCTCTCATTAGA
EST: gi|207841941|gb|GD816317.1|GD816317
EST:     TAACCTGCTACCAAATCTTAATGTTGCTGATCTTATCAAGGCTTTCGCAG                         TGAAAACCAATGATATGATGCTGGTAATATACCTCTCGTCTCTCATTAGAG
genomic: TAACCTGCTACCAAATCTTAATGTTGCTGATCTTATCAAGGCTTTCGCAGgttaagattt ... acatatgtagTGAAAACCAATGATATGATGCTGGTAATATACCTCTCGTCTCTCATTAGAA
EST: gi|193371957|gb|FK334600.1|FK334600
EST:     TAACCTGCTACCAAATCTTAATGTTGCTGATCTTATCAAGGCTTTCGCAG                         TGAAAACCAATGATATGATGCTGGTAATATACCTCTCGTCTCTCATTAGAA
genomic: TAACCTGCTACCAAATCTTAATGTTGCTGATCTTATCAAGGCTTTCGCAGgttaagattt ... acatatgtagTGAAAACCAATGATATGATGCTGGTAATATACCTCTCGTCTCTCATTAGAA
EST: gi|207740941|gb|GD714319.1|GD714319
EST:     TAACCTGCTACCAAATCTTAATGTTGCTGATCTTATCAAGGCTTTCGCAG                         TGAAAACCAATGATATGATGCTGGTAATATACCTCT
genomic: TAACCTGCTACCAAATCTTAATGTTGCTGATCTTATCAAGGCTTTCGCAGgttaagattt ... acatatgtagTGAAAACCAATGATATGATGCTGGTAATATACCTCT
EST: gi|207720695|gb|GD701738.1|GD701738
EST:     TAACCTGCTACCAAATCTTAATGTTGCTGATCTTATCAAGGCTTTCGCAG                         TGAAAACCAATGATATGATGCTGGTAATATACCTCTCGTCTCTCATTAGAA
genomic: TAACCTGCTACCAAATCTTAATGTTGCTGATCTTATCAAGGCTTTCGCAGgttaagattt ... acatatgtagTGAAAACCAATGATATGATGCTGGTAATATACCTCTCGTCTCTCATTAGAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GATGTGTTTAACCTGCTACCAAATCTTAATGTTGCTGATCTTATCAAGGCTTTCGCAGgttaagatttgtgacttgtattatttgaatatcatatttttctagaatgtctctttttaattgttgatctgttgtacatatgtag

- - - - - - - - - - - - - - - -  GCTGAT