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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATGGGAATTTGGTAGCATCTCTTATGGCTAACAAACTTAGGATAACTCAGGTTACTACCCTCTTATTGAAAATTTCCTGTTCAGCAACTTTTGTGGCTgtaaggatgtccttgttgctgtataaattaattcctcaggttgcttggaaaccag

Basic information

species Glycine max
transcript GLYMA11G33240.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G33240.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv04s0079g00230.t01 (Vitis vinifera), 5'ss of exon 8
------------------------------------------------TGATGGGAATTTGGTAGCATCTCTTATGGCTAACAAACTTAGGATAACTCAGGTTACTACCCTCTTATTGAAAATTTCCTGTTCAGCAACTTTTGTGGCTgtaaggatgtccttgttgctgtataaattaattcctcaggttgcttggaaaccag
                                                ||||||||||||||| |||||||| |||||||  |||||| |||||||||||||   |     || |||     |     |||  || |||        | |||  |    ||| |||||   ||  ||| |     |   |||   ||||| ||
CATTGAGCACATGGAAGGGAAACCAGACCTTATCATTGGAAACTACACTGATGGGAATTTGGTGGCATCTCTCATGGCTACTAAACTTGGGATAACTCAGgtg--tttttactcattagtggtagatagttt-gctact-----aaatataa--actgtcttcttgctagctac-ttactaatctaaaatgccctgaaactag