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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATCGAATAAAGATAATTCCTATGGGTAGCTACCCTCGAATCACAGACACCAATAACAGTACTTACGAGCTgtaagtatgattcatggttctacttttgtagtcaattgtgtctttgtggtttttgaatttatttatagaatttgatgctggctgaagttgagcctaaatc...

Basic information

species Glycine max
transcript GLYMA11G21490.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G21490.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv15s0046g00950.t01 (Vitis vinifera), 5'ss of exon 8
ATATCGAATAAAGATAATTCCTATGGGTAGCTACCCTCGAATCACAGACACCAATAACAGTACTTACGAGCTgtaagtatgattcatggttctacttttgtagtcaattgtgtctttgtggtttttgaatttatttatagaatttgatgctggctgaagttgagcctaaatc-----
||| |||||||| |||||||||||||| || |||||||| || || |||| ||| ||||||||||| || ||||||||||      || | |     || ||      | ||||||| |   |   | |||| |  |||  ||        | ||| | | |||   ||        
ATACCGAATAAAAATAATTCCTATGGGAAGTTACCCTCGGATTACGGACAGCAACAACAGTACTTATGAACTgtaagtatagcc--tgctcccttggttctaactggatttgtctttttaaata--gcattt-taaataatatgcagcttagactgtaatggagtgcaagaagccta
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208317518|gb|GE116215.1|GE116215
EST:     GACACCAATAACAGTTACTTACGAGCT                         GTTTGGTCCAGTCAACTTGTTCTGGAGTACTCGCTATGACAAAGCAATGAC
genomic: GACACCAATAACAG-TACTTACGAGCTgtaagtatga ... tggttttcagGTTTGGTCCAGTCAACTTGTTCTGGAGTACTCGCTATGACAAAGCAATGAC
EST: gi|58019925|gb|CX706667.1|CX706667
EST:     ATGGGTAGCTACCCTCGAATCACAGACACCAATAACAGTACTTACGAGCT                         GTTTGGTCCAGTCAACTTGTTCTGGAGTACTCGCTATGACAAAGCAATGAC
genomic: ATGGGTAGCTACCCTCGAATCACAGACACCAATAACAGTACTTACGAGCTgtaagtatga ... tggttttcagGTTTGGTCCAGTCAACTTGTTCTGGAGTACTCGCTATGACAAAGCAATGAC
EST: gi|298194263|gb|HO040911.1|HO040911
EST:     ATGGGTAGCTACCCTCGAATCACAGACACCAATAACAGTACTTACGAGCT                         GTTTGGTCCAGTCAACTTGTTCTGGAGTACTCGCTATGACAAAGCAATGAC
genomic: ATGGGTAGCTACCCTCGAATCACAGACACCAATAACAGTACTTACGAGCTgtaagtatga ... tggttttcagGTTTGGTCCAGTCAACTTGTTCTGGAGTACTCGCTATGACAAAGCAATGAC
EST: gi|16105648|gb|BI893388.1|BI893388
EST:     ATGGGTAGCTACCCTCGAATCACAGACACCAATAACAGTACTTACGAGCT                         GTTTGGTCCAGTCAACTTGTTCTGGAGTACTCGCTATGACAAAGCAATGAC
genomic: ATGGGTAGCTACCCTCGAATCACAGACACCAATAACAGTACTTACGAGCTgtaagtatga ... tggttttcagGTTTGGTCCAGTCAACTTGTTCTGGAGTACTCGCTATGACAAAGCAATGAC
EST: gi|57574660|gb|CX547635.1|CX547635
EST:     ATGGGTAGCTACCCTCGAATCACAGACACCAATAACAGTACTTACGAGCT                         GTTTGGTCCAGTCAACTTGTTCTGGAGTACTCGCTATGACAAAGCAATGAC
genomic: ATGGGTAGCTACCCTCGAATCACAGACACCAATAACAGTACTTACGAGCTgtaagtatga ... tggttttcagGTTTGGTCCAGTCAACTTGTTCTGGAGTACTCGCTATGACAAAGCAATGAC
EST: gi|20498067|gb|BQ272997.1|BQ272997
EST:     ATGGGTAGCTACCCTCGAATCACAGACACCAATAACAGTACTTACGAGCT                         GTTTGGTCCAGTCAACTTGTTCTGGAGTACTCGCTATGACAAAGCAATGAC
genomic: ATGGGTAGCTACCCTCGAATCACAGACACCAATAACAGTACTTACGAGCTgtaagtatga ... tggttttcagGTTTGGTCCAGTCAACTTGTTCTGGAGTACTCGCTATGACAAAGCAATGAC