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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTCTGTCAATAATAATAAGAATAAATCAGGAGATGCTGCCAAGAAGAATAATGCCATCAAGGCCACCCCCAAAAAGACTCGATCCAAATTTGTTGAAAGgtcagttcttaatttatttattttatttttatttgtatttttcgaaagcaaataattgtgtttgcatttggcattaattatagtttcttctctacatctc...

Basic information

species Glycine max
transcript GLYMA11G19490.1
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10843431|gb|BF066730.1|BF066730
EST:     AATGCCATCAAGGCCACCCCCAAAAAGACTCGATCCAAATTTGTTGAAGG                         ACTTAATTTACTGGAGTTGGGATTCGCTGCCTTCCTCTTAGTATGTGGATG
genomic: AATGCCATCAAGGCCACCCCCAAAAAGACTCGATCCAAATTTGTTGAAAGgtcagttctt ... atgataacagACTTAATTTACTGGAGTTGGGATTTGCTGCCTTCCTCTTCGTATGTGGATG
EST: gi|33389798|gb|CA853005.1|CA853005
EST:     AATGCCATCAAGGCCACCCCCAAAAAGACTCGATCCAAATTTGTTGAAAG                         ACTTAATTTACTGGAGTTGGGATTTGCTGCCTTCCTCTTCGTATGTGGATG
genomic: AATGCCATCAAGGCCACCCCCAAAAAGACTCGATCCAAATTTGTTGAAAGgtcagttctt ... atgataacagACTTAATTTACTGGAGTTGGGATTTGCTGCCTTCCTCTTCGTATGTGGATG
EST: gi|7924903|gb|AW830929.1|AW830929
EST:     AATGCCATCAAGGCCACCCCCAAAAAGACTCGATCCAAATTTGTTGAAAG                         ACTTAATTTACTGGAGTTGGGATTTGCTGCCTTCCTCTTCGTATGTGGATG
genomic: AATGCCATCAAGGCCACCCCCAAAAAGACTCGATCCAAATTTGTTGAAAGgtcagttctt ... atgataacagACTTAATTTACTGGAGTTGGGATTTGCTGCCTTCCTCTTCGTATGTGGATG
EST: gi|21888941|gb|BQ742154.1|BQ742154
EST:     AATGCCATCAAGGCCACCCCCAAAAAGACTCGATCCAAATTTGTTGAAAG                         ACTTAATTTACTGGAGTTGGGATTTGCTGCCTTCCTCTTCGTATGTGGATG
genomic: AATGCCATCAAGGCCACCCCCAAAAAGACTCGATCCAAATTTGTTGAAAGgtcagttctt ... atgataacagACTTAATTTACTGGAGTTGGGATTTGCTGCCTTCCTCTTCGTATGTGGATG
EST: gi|15664717|gb|BI702088.1|BI702088
EST:     AATGCCATCAAGGCCACCCCCAAAAAGACTCGATCCAAATTTGTTGAAAG                         ACTTAATTTACTGGAGTTGGGATTTGCTGCCTTCCTCTTCGTATGTGGATG
genomic: AATGCCATCAAGGCCACCCCCAAAAAGACTCGATCCAAATTTGTTGAAAGgtcagttctt ... atgataacagACTTAATTTACTGGAGTTGGGATTTGCTGCCTTCCTCTTCGTATGTGGATG
EST: gi|9902700|gb|BE611668.1|BE611668
EST:     ATGCCATCAAGGCCACCCCCAAAAAGACTCGATCCAAATTTGTTGAAAG                         ACTTAATTTACTGGAGTTGGGATTTGCTGCCTTCCTCTTCGTATGTGGATG
genomic: ATGCCATCAAGGCCACCCCCAAAAAGACTCGATCCAAATTTGTTGAAAGgtcagttctt ... atgataacagACTTAATTTACTGGAGTTGGGATTTGCTGCCTTCCTCTTCGTATGTGGATG