Sequence
atgc intronic sequence ATGC exonic sequenceAGCTGCAGATTGCTTGGGTGCTGACTGTGTGCCTCGATATGTTGAGATGAAGCAGATGGGGAGCTTTGATGTTGAAACTATCTTCAAACAAACTGAAACGgcaagtaatgtttggatgtgtttgtatgtggaagcatggatcaagcatttgttgacatgttttattttaggcttggacactatagttaatggagtatttt...
Basic information
species | Glycine max |
transcript | GLYMA11G19400.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA11G19400.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os11g05260.1 (Oryza sativa), 5'ss of exon 7
AGCTGCAGATTGCTTGGGTGCTGACTGTGTGCCTCGATATGTTGAGATGAAGCAGATGGGGAGCTTTGATGTTGAAACTATCTTC-AAACAAACTGAAACGgcaagtaatgtttggatgtgtttgtatgtggaagcatggatcaagcatttgttgacatgttttattttaggcttggacac-tatagttaatggagtatttt-
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GGCTGCAGATTGCTTAGGTGCTGACTGTGTGCCTCGTTATGTGGAAATGAAGAAACTGCTAGAACTAGAAATTGATGATGCCTTCCAAACAAAGCAAAAGgttagaccatttccacgttccatggcttctgtcacagtagctttactagtgcatagaatatttgaagat---cctgtacatgccttgaaaatccacacttgca
upper sequence: GLYMA11G19400.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv06s0061g01340.t01 (Vitis vinifera), 5'ss of exon 8
AGCTGCAGATTGCTTGGGTGCTGACTGTGTGCCTCGATATGTTGAGATGAAGCAGATGGGGAGCTTTGATGTTGAAACTATCTTCAAACAAACTGAAACGgcaagtaat--gtttggatgtgtttgtatgtggaagcatggatcaagcatttgttgacatgttttattttaggcttggacactatagttaatggagtatttt--
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----GCAGATTGCTTGGGGGCTGATTGTGTGCCTCGCTATGTTGAGATGAAGCAAATGCAGGACCTTGATCTTGAAAAAATACTTGGGCAATCAAAACAGGCAAgtatctaaatattaaatatttgagattttcctcatgccttattcagttgctgaggaaagatacaacataaaagaacttaggatcttattacaatttacatMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|51335424|gb|CO979290.1|CO979290EST: AGCAGATGGGGAGCTTTGATGTTGAAACTATCNTCAAACAAACTGAAACG GCTATATCCAATTTTCCACCATTTCAACCTGGGTGGTTAAATAGAGTTGAT
genomic: AGCAGATGGGGAGCTTTGATGTTGAAACTATCTTCAAACAAACTGAAACGgcaagtaatg ... tttattgcagGCTATATCCAATTTTCCACCATTTCAACCTGGGTGGTTAAATAGAGTTGAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGCTGCAGATTGCTTGGGTGCTGACTGTGTGCCTCGATATGTTGAGATGAAGCAGATGGGGAGCTTTGATGTTGAAACTATCTTCAAACAAACTGAAACGgcaagtaatgtttggatgtgtttgtatgtggaagcatggatcaagcatttgttgacatgttttattttaggcttggacactatagttaatggagtatttt
- - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT