Sequence
atgc intronic sequence ATGC exonic sequenceTAGCATAGATGCACTTCTGGAAAAGACCATCAAGCATATGCTTTTCCTGCAAAGTGTAACAAAGCATGCTGACAAGCTGAAACAGACAGGGGAGTCTAAGgtatagacatcatcttgtgctttttctcagcatctcagtttccgacaaatgatctagttatgatatgggaaatgttttcattttcaccggcattgtgttg...
Basic information
species | Glycine max |
transcript | GLYMA11G18290.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA11G18290.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os01g64560.2 (Oryza sativa), 5'ss of exon 7
TAGCATAGATGCACTTCTGGAAAAGACCATCAAGCATATGCTTTTCCTGCAAAGTGTAACAAAGCATGCTGACAAGCTGAAACAGACAGGGGAGTCTAAGgtatag-acatcatcttgtgctttttctcagc---atctcagtttccgacaaatgatctagttatgata--tgggaaatgttttcattttcaccggcattgtgttg
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TAGCATTGATACATTACTGGAGAAGACCATTAAGCATATGCTTTTCTTGCAAAATGTTGCAAAGCATGCTGATAAGTTGAAGGGATCTGGGGAGCCAAAGgtatgttgcatgata--gtacttatttttagttatgtatcagtatcttgta--tgaacaaggaacagccattaatgagagtgaacatctagcacaacagataat--
upper sequence: GLYMA11G18290.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os12g06330.1 (Oryza sativa), 5'ss of exon 7
TAGCATAGATGCACTTCTGGAAAAGACCATCAAGCATATGCTTTTCCTGCAAAGTGTAACAAAGCATGCTGACAAGCTGAAACAGACAGGGGAGTCTAAGgtatagacatcatcttgtgctttttctcagcatctcagtttccgacaaatgatctagttatgatatgggaaatgttttcattttca--ccggcattgtgttg------------------
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TAGCATTGATGCATTATTGGAAAAGACCATTAAGCACATGGTTTTCTTGCAAAGTGTGACGAAGCATGCAGACAACCTCAAGGATTCTAACGAATCAAAGgtatacaattcctatcattttctagcgtcacaatgaatagactagcttgcagcatattcaaagagaaattaatgttgcaaacctgatgtcattgctgtgctattggtgaactgtgaacag
upper sequence: GLYMA11G18290.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G069408_T01 (Zea mays), 5'ss of exon 7
TAGCATAGATGCACTTCTGGAAAAGACCATCAAGCATATGCTTTTCCTGCAAAGTGTAACAAAGCATGCTGACAAGCTGAAACAGACAGGGGAGTCTAAGgtatagacatcatcttgtgctttttctcagcatctcagtttccgacaaatgatctagttatgatatgggaaatgttttcattttcaccg---gcattgtgttg--
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TAGTATTGATGCATTACTGGAGAAGACCATTAAGCACATGCTTTTCTTGCAAAGTGTGACAAAGCATGCAGATAACCTCAAGGACTCAAACAAATCTGATgtatg--catgcacttattaattttgtcatctactc--cctccgtcccaggatataag-gcgtaaccacctctggttcaaagaccaagaaatgcatttaattgtc
upper sequence: GLYMA11G18290.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G031656_T02 (Zea mays), 5'ss of exon 8
TAGCATAGATGCACTTCTGGAAAAGACCATCAAGCATATGCTTTTCCTGCAAAGTGTAACAAAGCATGCTGACAAGCTGAAACAGACAGGGGAGTCTAAGgtatagacatcatcttgtgctttttc--tcagcatctcagtttccgacaaatgatctagttatga----tatgggaaatgttttcattttcaccggcattgtgttg
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---CATTGATGCCTTGTTGGAGAAGACCATTAAGCACATGGTTTTCTTGCAAAGTGTGACAAAGCATGCAGATAACCTCAAGGACTCAAATGAATCTAAGgtgtccacatacttattaattttgccatttaatttgcagcctttttgagaaggcaatagttactaacctcatgcagtatggataaactccaaacag----------
upper sequence: GLYMA11G18290.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G031656_T01 (Zea mays), 5'ss of exon 7
TAGCATAGATGCACTTCTGGAAAAGACCATCAAGCATATGCTTTTCCTGCAAAGTGTAACAAAGCATGCTGACAAGCTGAAACAGACAGGGGAGTCTAAGgtatagacatcatcttgtgctttttc--tcagcatctcagtttccgacaaatgatctagttatga----tatgggaaatgttttcattttcaccggcattgtgttg
|||||| ||||| | |||| |||||||| ||||| ||| ||||| |||||||||| ||||||||||| || || || || | || || |||||||| | |||| | | ||| | | | | || || | |||||| | ||| ||| | | | | | |
TAGCATTGATGCCTTGTTGGAGAAGACCATTAAGCACATGGTTTTCTTGCAAAGTGTGACAAAGCATGCAGATAACCTCAAGGACTCAAATGAATCTAAGgtgtccacatacttattaattttgccatttaatttgcagcctttttgagaaggcaatagttactaacctcatgcagtatggataaactccaaacag----------
upper sequence: GLYMA11G18290.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv06s0009g00440.t01 (Vitis vinifera), 5'ss of exon 7
TAGCATAGATGCACTTCTGGAAAAGACCATCAAGCATATGCTTTTCCTGCAAAGTGTAACAAAGCATGCTGACAAGCTGAAACAGACAGGGGAGTCTAAGgtatagacatcatcttgtgctttttctcagcatctcagtttccgacaaatgatctagttatgatatgggaaatgtt-ttcattttcaccggcattgtgttg---
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TAGCATTGATGCACTGCTTGAACGCACCATCAAGCATATGCTTTTCTTGCAAAGTGTCATGAAGCATGCAGACAAGCTAAAGCAAACTGGAGAGTCTAAGgtgagaacaatgtctagtttccttactt--tgtctctatatccatcaatc--tcttgctggaatccacttggagcaactggctcctggtgacccagagaaaaggMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193446790|gb|FK411753.1|FK411753EST: TGTAACAAAGCATGCTGACAAGCTGAAACAGACAGGGGAGTCTAAG ATAGTTAGTAAAGAAGGTGGATTGCTATTAAAAGATAACTTTGAGGGAGGG
genomic: TGTAACAAAGCATGCTGACAAGCTGAAACAGACAGGGGAGTCTAAGgtatagacat ... gaatatgcagATAGTTAGTAAAGAAGGTGGATTGCTATTAAAAGATAACTTTGAGGGAGGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TAGCATAGATGCACTTCTGGAAAAGACCATCAAGCATATGCTTTTCCTGCAAAGTGTAACAAAGCATGCTGACAAGCTGAAACAGACAGGGGAGTCTAAGgtatagacatcatcttgtgctttttctcagcatctcagtttccgacaaatgatctagttatgatatgggaaatgttttcattttcaccggcattgtgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA