Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGATCCTTCTCAAAAGAATCAACTTCTTATTTTAAAGTTTCTTCCACTCATGATTGGCTACTTCTCACTATCTGTCCCATCAGGACTAACAATTTACTGgttagtttttcagaaactatattaataccatcctttctagtcaataaattcttatttttcatgattttgccataacttgaaacattctttgctttattat...

Basic information

species Glycine max
transcript GLYMA11G14960.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G14960.1 (Glycine max), 5'ss of exon 8
lower sequence: AT2G28800.3 (Arabidopsis thaliana), 5'ss of exon 8
CAGATCCTTCTCAAAAGAATCAACTTCTTATTTTAAAGTTTCTTCCACTCATGATTGGCTACTTCTCACTATCTGTCCCATCAGGACTAACAATTTACTGgttagtttttcagaaactatattaataccatcctttctagtcaataaattcttatttttcatgattttgccataacttgaaacattctttgctttattat------
    |||| | || ||||||   |||||| |||| |||||||||||||||||||| || |||||  || | |||||||||||||||||| | ||||||||||| ||||  |     |  |   | | |    ||  ||  |  ||  || |   |  |  |    ||      |   | | | |   |||   |  | ||      
----TCCTGCACAGAAGAATACGCTTCTTGTTTTCAAGTTTCTTCCACTCATGATCGGTTACTTTGCATTGTCTGTCCCATCAGGACTATCTATTTACTGGTTGgtttccctc--tccttgaaacttctcatctaactgttttatccatgcccttgatctactcattaaatggagtataagaaagattttctctagtaattaacct

upper sequence: GLYMA11G14960.1 (Glycine max), 5'ss of exon 8
lower sequence: AT2G28800.4 (Arabidopsis thaliana), 5'ss of exon 7
CAGATCCTTCTCAAAAGAATCAACTTCTTATTTTAAAGTTTCTTCCACTCATGATTGGCTACTTCTCACTATCTGTCCCATCAGGACTAACAATTTACTGgttagtttttcagaaactatattaataccatcctttctagtcaataaattcttatttttcatgattttgccataacttgaaacattctttgctttattat--
  |||||| | || ||||||   |||||| |||| |||||||||||||||||||| || |||||  || | |||||||||||||||||| | ||||||||||| ||||  |     |  |   | | |    ||  ||  |  ||  || |   |  |  |    ||      |   | | | |   |||   |  | ||  
ATGATCCTGCACAGAAGAATACGCTTCTTGTTTTCAAGTTTCTTCCACTCATGATCGGTTACTTTGCATTGTCTGTCCCATCAGGACTATCTATTTACTGgttggtttccctc--tccttgaaacttctcatctaactgttttatccatgcccttgatctactcattaaatggagtataagaaagattttctctagtaatta

upper sequence: GLYMA11G14960.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv06s0004g04460.t01 (Vitis vinifera), 5'ss of exon 8
CAGATCCTTCTCAAAAGAATCAACTTCTTATTTTAAAGTTTCTTCCACTCATGATTGGCTACTTCTCACTATCTGTCCCATCAGGACTAACAATTTACTGgttagtttttcagaaactatattaatac--catcctttctagtcaataaatt-cttatttttcatgattttgccataacttgaaacattctttgctttattat
  ||||| ||||||||||||  ||||||| |||| ||||||||||||||||||||||| ||||| || |||||||||||||||||| || |||||||||||||||||| | |  |||||| ||  |    ||||| |         || ||| |||    || ||||    |  | | |||  |  | |   ||| || |   
ATGATCCATCTCAAAAGAATACACTTCTTGTTTTCAAGTTTCTTCCACTCATGATTGGTTACTTTTCTCTATCTGTCCCATCAGGATTATCAATTTACTGgttagtttctgattaactatttttgtctttcatccatgtcttatgctacattacttggacttaatgaacaggata-atcttagagaagtacatgcattgtg--

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193484846|gb|FK452084.1|FK452084
EST:     ATGATTGGCTACTTCTCATTATCTGTCCCATCTGGACTAACAATTTACTG                         GTTTATAGACAATGTCCTGAGCACAGCTCAACAAGTATGGTTGCGAAAATT
genomic: ATGATTGGCTACTTCTCACTATCTGTCCCATCAGGACTAACAATTTACTGgttagttttt ... cttttactagGTTTATAAACAATGTCCTGAGCACAGCTCAACAAGTATGGTTGCGCAAATT
EST: gi|22526016|gb|BU084827.1|BU084827
EST:     ATGATTGGCTACTTCTCACTATCTGTCCCATCAGGACTAACAATTTACTG                         GTTTATAAACAATGTCCTGAGCACAGCTCAACAAGTATGGTTGCGCAAATT
genomic: ATGATTGGCTACTTCTCACTATCTGTCCCATCAGGACTAACAATTTACTGgttagttttt ... cttttactagGTTTATAAACAATGTCCTGAGCACAGCTCAACAAGTATGGTTGCGCAAATT
EST: gi|16104820|gb|BI892560.1|BI892560
EST:     ATGATTGGCTACTTCTCACTATCTGTCCCATCAGGACTAACAATTTACTG                         GTTTATAAACAATGTCCTGAGCACAGCTCAACAAGTATGGTTGCGCAAATT
genomic: ATGATTGGCTACTTCTCACTATCTGTCCCATCAGGACTAACAATTTACTGgttagttttt ... cttttactagGTTTATAAACAATGTCCTGAGCACAGCTCAACAAGTATGGTTGCGCAAATT
EST: gi|16105954|gb|BI893694.1|BI893694
EST:     GCTACTTCTCACTATCTGTCCCATCAGGACTAACAATTTACTG                         GTTTATAAACAATGTCCTGAGCACAGCTCAACAAGTATGGTTGCGCAAATT
genomic: GCTACTTCTCACTATCTGTCCCATCAGGACTAACAATTTACTGgttagttttt ... cttttactagGTTTATAAACAATGTCCTGAGCACAGCTCAACAAGTATGGTTGCGCAAATT