Sequence
atgc intronic sequence ATGC exonic sequenceCAAAGCGATCTGAGATCGTCCAGCGTCGAATACGCAGGCCTTTTTCTGTAGATGAAGTAGAAGCACTGGTTCAAGCAGTTGAAAAACTAGGAACTGGAAGgtaagatttacattagacttggtttggcttgacaattatatttaatgggttgtgtgtgtactctatcttgttgctagtatgtgggtggtagataattgtc...
Basic information
species | Glycine max |
transcript | GLYMA11G14760.3 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA11G14760.3 (Glycine max), 5'ss of exon 8
lower sequence: AT5G59430.2 (Arabidopsis thaliana), 5'ss of exon 8
CAAAGCGATCTGAGATCGTCCAGCGTCGAATACGCAGGCCTTTTTCTGTAGATGAAGTAGAAGCACTGGTTCAAGCAGTTGAAAAACTAGGAACTGGAAGgtaagatttacattagacttggtttggcttgacaattatatttaatgggttgtgtgtgtactctatcttgttgctagtatgtgggtggtagataattgtc
||| || | || || |||| || | ||||| || || | ||||||||||||||| |||||||||||||| ||||| || |||||||||||| | ||| || || ||||| | ||||| | | | || || | | | |||| | | | |
AGCAGCAGCAGCAGGCTGCACAACGCAGAATTCGTCGACCTTTCTCAGTTGCTGAAGTAGAAGCACTTGTTCAAGCAGTTGAGAAACTCGGTACTGGAAGgtaaaaaa-acactaatacaagtcatatagtgttggcttatttg--tgattgtgaatagaag--aagatgatgattaaagtttggtga-aaactgtag--
upper sequence: GLYMA11G14760.3 (Glycine max), 5'ss of exon 8
lower sequence: AT3G46590.1 (Arabidopsis thaliana), 5'ss of exon 8
CAAAGCGATCTGAGATCGTCCAGCGTCGAATACGCAGGCCTTTTTCTGTAGATGAAGTAGAAGCACTGGTTCAAGCAGTTGAAAAACTAGGAACTGGAAGgtaagatttacattagacttggtttggcttgacaattatatttaatgggttgtgtgtgtactctatcttgttgctagtatgtgggtggtagataattgtc
| ||| | || || |||| || | ||||| || || |||||||||||||||||| ||||| ||||| ||||| ||||| |||||||| | | | | ||| ||| || | | | ||||| || | |||
CTGAGCAGCAGCTAGCTGCACAACGCAGAATTCGTCGACCTTTCTCAGTTACTGAAGTAGAAGCACTGGTCCAAGCCGTTGAGAAACTCGGAACCGGAAGgtacaaaacaaagaaatagcactttctcttcttcat-gttgctgacaaaatgtgtttgaaaactacag--------------------------------
upper sequence: GLYMA11G14760.3 (Glycine max), 5'ss of exon 8
lower sequence: Vv06s0004g04940.t01 (Vitis vinifera), 5'ss of exon 8
CAAAGCGATCTGAGATCGTCCAGCGTCGAATACGCAGGCCTTTTTCTGTAGATGAAGTAGAAGCACTGGTTCAAGCAGTTGAAAAACTAGGAACTGGAAGgtaagattta-----cattagacttggtttggcttgacaattatatttaatgggttgtgtgtgtactctatcttgtt-gctagtatgtgggtggtagataattgtc
| |||||||||||||| || || |||||||| || | ||||||||||| |||||| || ||||| ||||||||||| || ||||| |||||||||||||| |||| || | || | | | |||| | | ||| || || | | |||| | || || || |||
CCAAGCGATCTGAGATTGTGCAACGTCGAATTCGTCGACCTTTTTCTGTTTCTGAAGTGGAGGCACTAGTTCAAGCAGTCGAGAAACTTGGAACTGGAAGgtattttttatgaaacacaactctggaagttgtttgatactgcaattgaagtggctaaaaccgctaaaaccaatgttcagttgtgtgaaggcaaaagacg------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|7285924|gb|AW598411.1|AW598411EST: GATGAAGTAGAAGCACTGGTTCAAGCAGTTGAAAAACTAAGAACTGGAAG GATAAATGGAAAACACTGGTGCACACGGCAAGAATATCCCCTCAGCATAGG
genomic: GATGAAGTAGAAGCACTGGTTCAAGCAGTTGAAAAACTAGGAACTGGAAGgtaagattta ... ttgtgcacagGATAAATGGAAAACACTGGTGCACACGGCAAGAATATCCCCTCAGCAAAGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CAAAGCGATCTGAGATCGTCCAGCGTCGAATACGCAGGCCTTTTTCTGTAGATGAAGTAGAAGCACTGGTTCAAGCAGTTGAAAAACTAGGAACTGGAAGgtaagatttacattagacttggtttggcttgacaattatatttaatgggttgtgtgtgtactctatcttgttgctagtatgtgggtggtagataattgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgggtgg