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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAATGTGTCCCTGAAGATGCTATCCACTTTATTGTCTCAACATTTTTTGATCAAGTTGTGACCCTATCAACACATCCGTATGGTTGCCGGGTGATACAGgtaatttcccttcactgcttatgttacacttatcatgtataactaagattgtttgtcatataagaataccttctacatgacag

Basic information

species Glycine max
transcript GLYMA11G14550.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G14550.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv06s0004g05100.t01 (Vitis vinifera), 5'ss of exon 5
TGAATGTGTCCCTGAAGATGCTATCCACTTTATTGTCTCAACATTTTTTGATCAAGTTGTGACCCTATCAACACATCCGTATGGTTGCCGGGTGATACAGgt-aatttcccttcactgcttatgttacacttatcatgtat---aactaagattgtttgtcatataag-----aataccttctacatgacag--------
||||||||| |||||||||||||| || |||||  |||||||||| |||||||| ||||||||||| ||||| ||||| ||||| || || ||||||||||| |    |  || | ||||||| ||  || | |   |  |   |  | |     |  |  | |   |     ||||  ||  | | |  |         
TGAATGTGTTCCTGAAGATGCTATTCAGTTTATCATCTCAACATTCTTTGATCAGGTTGTGACCCTCTCAACCCATCCATATGGGTGTCGTGTGATACAGgttagaaactttttattgcttatcttttacatcttgagggttcaatttgaagacataaggaagaagtgcttccaatatttttcataggcaaagatcaaat

upper sequence: GLYMA11G14550.1 (Glycine max), 5'ss of exon 8
lower sequence: EFJ20967 (Selaginella moellendorffii), 5'ss of exon 3
TGAATGTGTCCCTGAAGATGCTATCCACTTTATTGTCTCAACATTTTTTGATCAAGTTGTGACCCTATCAACACATCCGTATGGTTGCCGGGTGATACAGgtaa--tttcccttcactgcttatgttacacttatcatgtataactaagattgtttgtcata---taagaataccttctacatgacag
 |||||||| ||||  |||   ||||| |||||  |||   | |||| || ||||||  || | || ||||||||||||||||| |||||||| |||||||| |    |   || | |  ||       ||||   | |  |   |    || ||| |  |    |  |  |  | | | | |  |||
AGAATGTGTTCCTGCCGATCGCATCCAATTTATAATCTGTGCGTTTTATGGTCAAGTATTGGCTCTCTCAACACATCCGTATGGATGCCGGGTTATACAGgtgaggcatgttttgagtcgtttcaagttacttgagacgattgttttgtttttttttttttggtttttgttttacgttttcttcccag

upper sequence: GLYMA11G14550.1 (Glycine max), 5'ss of exon 8
lower sequence: EFJ32290 (Selaginella moellendorffii), 5'ss of exon 3
TGAATGTGTCCCTGAAGATGCTATCCACTTTATTGTCTCAACATTTTTTGATCAAGTTGTGACCCTATCAACACATCCGTATGGTTGCCGGGTGATACAGgtaa--tttcccttcactgcttatgttacacttatcatgtataactaagattgtttgtca-tataagaataccttctacatgacag
 |||||||| |||   |||   ||||| |||||  |||   | |||| || ||||||  || | || ||||||||||||||||| |||||||| |||||||| |    |   || | |  ||       ||||   | |  |   |    || ||| |   | |  |  |  | | | | |  |||
AGAATGTGTTCCTCCCGATCGCATCCAATTTATAATCTGTGCGTTTTATGGTCAAGTATTGGCTCTCTCAACACATCCGTATGGATGCCGGGTTATACAGgtgaggcatgttttgagtcgtttcaagttacttgagacggttgttttgtttttttttttggtttttgttttacgttttcttcccag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193421972|gb|FK388423.1|FK388423
EST:     GCCGGGTGATACAG                         AGAGTGCTGGAACATTGCAAAGACCCTACAACACAGCAGAAAGTTATGGAT
genomic: GCCGGGTGATACAGgtaatttccc ... tacatgacagAGAGTGCTGGAACATTGCAAAGACCCTACAACACAGCAGAAAGTTATGGAT
EST: gi|207692503|gb|GD674014.1|GD674014
EST:     ATCAAGTTGTGACCCTATCAACACATCCGTATGGTTGCCGGGTGATACAG                         AGAGTGCTGGAACATTGCAAAGACCCTACAACACAGCAGAAAGTTATGGAT
genomic: ATCAAGTTGTGACCCTATCAACACATCCGTATGGTTGCCGGGTGATACAGgtaatttccc ... tacatgacagAGAGTGCTGGAACATTGCAAAGACCCTACAACACAGCAGAAAGTTATGGAT
EST: gi|21677598|gb|BQ629949.1|BQ629949
EST:     ATCAAGTTGTGACCCTATCAACACATCCGTATGGTTGCCGGGTGATACAG                         AGAGTGCTGGAACATTGCAAAGACCCTACAACACAGCAGAAAGGTATGGAT
genomic: ATCAAGTTGTGACCCTATCAACACATCCGTATGGTTGCCGGGTGATACAGgtaatttccc ... tacatgacagAGAGTGCTGGAACATTGCAAAGACCCTACAACACAGCAGAAAGTTATGGAT
EST: gi|193624420|gb|FK573432.1|FK573432
EST:     GTTGTGACCCTATCAACACATCCGTATGGTTGCCGGGTGATACAG                         AGAGTGCTGGAACATTGCAAAGACCCTACAACACAGCAGAAAGTTATGGAT
genomic: GTTGTGACCCTATCAACACATCCGTATGGTTGCCGGGTGATACAGgtaatttccc ... tacatgacagAGAGTGCTGGAACATTGCAAAGACCCTACAACACAGCAGAAAGTTATGGAT