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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATCACCAACACGGAAGATGGCAAGCAAGAATTGGCAGAGTTGCAGGAAACAAAGATCTTTACTTGGGAACTTTCAgtaagccacacatttaaccccttgcaaagaaagttacactaaatagaacttcaaattaaccatttcctatatgtaaaaaaaaaatatttattaatagaac...

Basic information

species Glycine max
transcript GLYMA11G14040.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G14040.2 (Glycine max), 5'ss of exon 9
lower sequence: Vv06s0004g01800.t01 (Vitis vinifera), 5'ss of exon 7
GCATCACCAACACGGAAGATGGCAAGCAAGAATTGGCAGAGTTGCAGGAAACAAAGATCTTTACTTGGGAACTTTCAgtaagccacacatttaa---ccccttgcaaagaaagttacactaaatagaacttcaa-atta--accatttcctatatgtaaaaaaaaaatatttattaatagaac--------------------------------------
|||||| ||||| ||||||||||| ||||| ||||| |||||||| ||||||||||| || || ||||||||||| ||||||          ||   ||  ||      |   ||  |||    |  |  |  | |||   |||| ||        | | |  | ||| |  |  || |                                          
GCATCATCAACATGGAAGATGGCAGGCAAGGATTGGAAGAGTTGCCGGAAACAAAGACCTCTATTTGGGAACTTTTAgtaagtagtttgaacaaggaccatttcttttaagtcttctacttgcaaacatctagatattggcaccaatttaaccgaattacaggataatttacaagaacaaggtgcaattattcttgataaatcccaaaactgactgtgtag

upper sequence: GLYMA11G14040.2 (Glycine max), 5'ss of exon 9
lower sequence: EFJ16224 (Selaginella moellendorffii), 5'ss of exon 5
GCATCACCAACACGGAAGATGGCAAGCAAGAATTGGCAGAGTTGCAGGAAACAAAGATCTTTACTTGGGAACTTTCAgtaagccacacatttaaccccttgcaaagaaagttacactaaatagaacttcaaattaaccatttcctatatgtaaaaaaaaaatatttattaatagaac
||||||||| || ||||||||||||||  | || ||  ||||||| || || |||||||| ||| | |||||||||||||||       ||  | |         ||||| |        |  || |||   | ||   |||||| | |   |  |||                   
GCATCACCAGCAAGGAAGATGGCAAGCTCGGATCGGACGAGTTGCCGGGAATAAAGATCTGTACCTCGGAACTTTCAgtaagtt-----ttcgatc---------gaaagct--------ttcaagttcg--taaatgttttccttttttcgatgaaag------------------

upper sequence: GLYMA11G14040.2 (Glycine max), 5'ss of exon 9
lower sequence: EFJ17692 (Selaginella moellendorffii), 5'ss of exon 5
GCATCACCAACACGGAAGATGGCAAGCAAGAATTGGCAGAGTTGCAGGAAACAAAGATCTTTACTTGGGAACTTTCAgtaagccacacatttaaccccttgcaaagaaagttacactaaatagaacttcaaattaaccatttcctatatgtaaaaaaaaaatatttattaatagaac
||||||||| || ||||||||||||||  | || ||  ||||||| || || |||||||| ||| | |||||||||||||||       ||  | |         ||||| |        |  || |||   | ||   |||||| | |   |  |||                   
GCATCACCAGCAGGGAAGATGGCAAGCTCGGATCGGACGAGTTGCGGGGAATAAAGATCTGTACCTCGGAACTTTCAgtaagtt-----ttcgatc---------gaaagct--------ttcaagttcg--taaattttttccttttttcgatgaaag------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16996716|gb|BM086088.1|BM086088
EST:     AAGAATTGGCAGAGTTGCAGGAAACAAAGATCTTTACTTGGGAACTTTCA                         GTACTGAAGAAGAGGCTGCTGAAGCATACGACATAGCTGCGATAAAGTTCA
genomic: AAGAATTGGCAGAGTTGCAGGAAACAAAGATCTTTACTTGGGAACTTTCAgtaagccaca ... ctcgttgcagGTACTGAAGAAGAGGCTGCTGAAGCATACGACATAGCTGCGATAAAGTTCA
EST: gi|24206010|gb|BU965263.1|BU965263
EST:     AAGAATTGGCAGAGTTGCAGGAAACAAAGATCTTTACTTGGGAACTTTCA                         GTACTGAAGAAGAGGCTGCTGAAGCATACGACATAGCTGCGATAAAGTTCA
genomic: AAGAATTGGCAGAGTTGCAGGAAACAAAGATCTTTACTTGGGAACTTTCAgtaagccaca ... ctcgttgcagGTACTGAAGAAGAGGCTGCTGAAGCATACGACATAGCTGCGATAAAGTTCA
EST: gi|24205644|gb|BU964897.1|BU964897
EST:     AAGAATTGGCAGAGTTGCAGGAAACAAAGATCTTTACTTGGGAACTTTCA                         GTACTGAAGAAGAGGCTGCTGAAGCATACGACATAGCTGCGATAAAGTTCA
genomic: AAGAATTGGCAGAGTTGCAGGAAACAAAGATCTTTACTTGGGAACTTTCAgtaagccaca ... ctcgttgcagGTACTGAAGAAGAGGCTGCTGAAGCATACGACATAGCTGCGATAAAGTTCA
EST: gi|17023082|gb|BM094116.1|BM094116
EST:     AAGAATTGGCAGAGTTGCAGGAAACAAAGATCTTTACTTGGGAACTTTCA                         GTACTGAAGAAGAGGCTGCTGAAGCATACGACATAGCTGCGATAAAGTTCA
genomic: AAGAATTGGCAGAGTTGCAGGAAACAAAGATCTTTACTTGGGAACTTTCAgtaagccaca ... ctcgttgcagGTACTGAAGAAGAGGCTGCTGAAGCATACGACATAGCTGCGATAAAGTTCA
EST: gi|15201199|gb|BI424745.1|BI424745
EST:     AAGAATTGGCAGAGTTGCAGGAAACAAAGATCTTTACTTGGGAACTTTCA                         GTACTGAAGAAGAGGCTGCTGAAGCATACGACATAGCTGCGATAAAGTTCA
genomic: AAGAATTGGCAGAGTTGCAGGAAACAAAGATCTTTACTTGGGAACTTTCAgtaagccaca ... ctcgttgcagGTACTGAAGAAGAGGCTGCTGAAGCATACGACATAGCTGCGATAAAGTTCA