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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCCTGTTTCACGGCACATTGAGGATCAGGGACTTGAATTTCTTCAGTTTGCTTTCCGCTGGTTCAACTGTCTTCTCATCCGTGAGgtttgcaatgatattttgttctcttataaggggggaagttttctcaacatataattgataacttgacagaatggaaacattggtctgagataaattgggatgattttgtgcttttttactaatgatgtctgattatataattag

Basic information

species Glycine max
transcript GLYMA11G13330.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G13330.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G142806_T01 (Zea mays), 5'ss of exon 9
AGCCTGTTTCACGGCACATTGAGGATCAGGGACTTGAATTTCTTCAGTTTGCTTTCCGCTGGTTCAACTGTCTTCTCATCCGTGAGgtttgcaatgatattttgttctcttataaggggggaagttttctcaacatataattgataacttgacagaatggaaacattggtctgagataaattgggatgattttgtgcttttttactaatgatgtctgattatataattag
| ||||||||   ||||||||| || || ||| | || |||||||||||||| ||||||||||||||||| ||||| || || ||||||||      | || |      | || ||      | | | | || || | ||| |  |||   |     | | |                                                                    
AACCTGTTTCCAAGCACATTGAAGAGCAAGGATTAGAGTTTCTTCAGTTTGCCTTCCGCTGGTTCAACTGCCTTCTGATACGAGAGgtttg------tcttgtaacacttgatgagatatttattatacacaccacaaaatagccaacc--atttcgttgcag-------------------------------------------------------------------

upper sequence: GLYMA11G13330.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv05s0094g00070.t01 (Vitis vinifera), 5'ss of exon 8
AGCCTGTTTCACGGCACATTGAGGATCAGGGACTTGAATTTCTTCAGTTTGCTTTCCGCTGGTTCAACTGTCTTCTCATCCGTGAGgtttgcaatgatattttgttctcttataaggg----gggaagttttctcaacatataattgataacttgacagaatggaaacattggtctgagataaattgggatgattttgtgcttttttactaatgatgtctgattatataattag
| ||||||||| ||||||| ||||| || || ||||| |||||||| ||||||||||| ||||||||||||||||| || || ||||||||      || ||   || ||  |  | |      |   |  | ||  |   |  |   |  |||           | ||| ||||     |||                                                   
AACCTGTTTCAAGGCACATGGAGGAGCAAGGGCTTGAGTTTCTTCAATTTGCTTTCCGTTGGTTCAACTGTCTTCTAATACGAGAGgtttgtctcactacttgcatcactagtttgtgctccaagtcatgatttcctcgagttttcttttccttatttagtccagagcatgggtcaatcttaagaa------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120529818|gb|EH257952.1|EH257952
EST:     AATTTCTTCAGTTTGCTTTCCGCTGGTTCAACTGTCTTCTCATCCGTGAG                         ATACCATTCCATCTCATCACACGCCT
genomic: AATTTCTTCAGTTTGCTTTCCGCTGGTTCAACTGTCTTCTCATCCGTGAGgtttgcaatg ... atataattagATACCATTCCATCTCATCACACGCCT
EST: gi|192328709|gb|FK022523.1|FK022523
EST:     AATTTCTTCAGTTTGCTTTCCGCTGGTTCAACTGTCTTCTCATCCGTGAG                         ATACCATTCCATCTCATCACACGCCTTTGGGACACATATTTAGCTGAAGGA
genomic: AATTTCTTCAGTTTGCTTTCCGCTGGTTCAACTGTCTTCTCATCCGTGAGgtttgcaatg ... atataattagATACCATTCCATCTCATCACACGCCTTTGGGACACATATTTAGCTGAAGGA