1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
TGAGTTGCCAGAATTTCTGGGAGGTACCTGTACCTGTGCAGATCAGGGTGGTTGCCTCAGATCTGATAAAGGACCCTGGAAAAACCCTGAAATATTGAAGgttatacactgacctttctgcataataggttcaacacatgttctactatatcaatcttactacatgctaactgttaattacatgtggacattttgcag
species | Glycine max |
transcript | GLYMA11G12260.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: GTTGCCTCAGATTTGAT-AAGGACCCTGGAAAAACCCTGAAATATTGAAG ATGATTCTCAGTGGTGAAGCACGGCGAGCAAGGCCAGTAGTAAAAGTTCTAEST: gi|13181204|gb|BG352544.1|BG352544
genomic: GTTGCCTCAGATCTGATAAAGGACCCTGGAAAAACCCTGAAATATTGAAGgttatacact ... cattttgcagATGATTCTCAGTGGTGAAGCACGGCGAGCAAGGCCAGTAGTAAAAGTTCTA
EST: GTTGCCTCAGATCTGAT-AAGGACCCTGGAAAAACCCTGAAATATTGAAG ATGATTCTCAGTGGTGAAGCACGGCGAGCAAGGCCAGTAGTAAAAGTTCTAEST: gi|18040573|gb|BM308867.1|BM308867
genomic: GTTGCCTCAGATCTGATAAAGGACCCTGGAAAAACCCTGAAATATTGAAGgttatacact ... cattttgcagATGATTCTCAGTGGTGAAGCACGGCGAGCAAGGCCAGTAGTAAAAGTTCTA
EST: GTTGCCTCAGATCTGATAAAGGACCCTGGAAAAACCCTGAAATATTGAAG ATGATTCTCAGTGGTGAAGCACGGCGAGCAAGGCCAGTAGTAAAAGTTCTAEST: gi|193350410|gb|FK315356.1|FK315356
genomic: GTTGCCTCAGATCTGATAAAGGACCCTGGAAAAACCCTGAAATATTGAAGgttatacact ... cattttgcagATGATTCTCAGTGGTGAAGCACGGCGAGCAAGGCCAGTAGTAAAAGTTCTA
EST: TTGCCTCAGATTTGATAAAGGACCCTGGAAAAAACCCTGAAATATTGAAG ATGATTCTCAGTGGTGAAGCACGGCGAGCAAGGCCAGTAGTAAAAGTTCTAEST: gi|193347330|gb|FK313104.1|FK313104
genomic: TTGCCTCAGATCTGATAAAGGACCCTGG-AAAAACCCTGAAATATTGAAGgttatacact ... cattttgcagATGATTCTCAGTGGTGAAGCACGGCGAGCAAGGCCAGTAGTAAAAGTTCTA
EST: TTGCCTCAGATTTGATAAAGGACCCTGGAAAAAACCCTGAAATATTGAAG ATGATTCTCAGTGGTGAAGCACGGCGAGCAAGGCCAGTAGTAAAAGTTCTAEST: gi|15813836|gb|BI786111.1|BI786111
genomic: TTGCCTCAGATCTGATAAAGGACCCTGGAAAAA-CCCTGAAATATTGAAGgttatacact ... cattttgcagATGATTCTCAGTGGTGAAGCACGGCGAGCAAGGCCAGTAGTAAAAGTTCTA
EST: GTTGCCTCAGATCTGATAAAGGACCCTGGAAAAACCCTGAAATATTGAAG ATGATTCTCAGTGGTGAAGCACGGCGAGCAAGGCCAGTAGTAAAAGTTCTAEST: gi|193419797|gb|FK382425.1|FK382425
genomic: GTTGCCTCAGATCTGATAAAGGACCCTGGAAAAACCCTGAAATATTGAAGgttatacact ... cattttgcagATGATTCTCAGTGGTGAAGCACGGCGAGCAAGGCCAGTAGTAAAAGTTCTA
EST: TTGCCTCAGATTTGATAAAGGACCCTGGAAAAACCCCTGAAATATTGAAG ATGATTCTCAGTGGTGAAGCACGGCGAGCAAGGCCAGTAGTAAAAGTTCTAEST: gi|193339980|gb|FK306237.1|FK306237
genomic: TTGCCTCAGATCTGATAAAGGACCCTGGAAAAA-CCCTGAAATATTGAAGgttatacact ... cattttgcagATGATTCTCAGTGGTGAAGCACGGCGAGCAAGGCCAGTAGTAAAAGTTCTA
EST: GTTGCCTCAGATTTGATAAAGGACCCTGGAAAAACCCTGAAATATTGAAG ATGATTCTCAGTGGTGAAGCACGGCGAGCAAGGCCAGTAGTAAAAGTTCTA
genomic: GTTGCCTCAGATCTGATAAAGGACCCTGGAAAAACCCTGAAATATTGAAGgttatacact ... cattttgcagATGATTCTCAGTGGTGAAGCACGGCGAGCAAGGCCAGTAGTAAAAGTTCTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGAGTTGCCAGAATTTCTGGGAGGTACCTGTACCTGTGCAGATCAGGGTGGTTGCCTCAGATCTGATAAAGGACCCTGGAAAAACCCTGAAATATTGAAGgttatacactgacctttctgcataataggttcaacacatgttctactatatcaatcttactacatgctaactgttaattacatgtggacattttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG