1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GTGGCTTTTTACGCACTACTTATATATTTTGCTACATCAATGGGTACACATACAATGGCTGCTCATCAAgttagtgttttttttgtttcctgttttgtgactattccttcctttgcctgccatctgagctttttttaaaaacaaaaactcaaggccagtgataacttcattccctcttcag
species | Glycine max |
transcript | GLYMA11G11970.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TTATATATTTTGCTACATCAATGGGTACACATACAATGGCTGCTCATCAA GTCATGGTCCAAACCTATTTAATGTGTACCGTATGGGGTGAACCTCTCTCCEST: gi|58014198|gb|CX700940.1|CX700940
genomic: TTATATATTTTGCTACATCAATGGGTACACATACAATGGCTGCTCATCAAgttagtgttt ... ccctcttcagGTCATGGTCCAAACCTATTTAATGTGTACCGTATGGGGTGAACCTCTCTCC
EST: ATGGTTGCTCATCAA GTCATGGTCCAAACCTATTTAATGTGTACCGTATGGGGTGAACCTCTCTCCEST: gi|151398578|gb|EV268449.1|EV268449
genomic: ATGGCTGCTCATCAAgttagtgttt ... ccctcttcagGTCATGGTCCAAACCTATTTAATGTGTACCGTATGGGGTGAACCTCTCTCC
EST: TTATATATTTTGCTACATCAATGGGTACACATACAATGGCTGCTCATCAA GTCATGGTCCAAACCTATTTAATGTGTACCGTATGGGGTGAACCTCTCTCCEST: gi|58018656|gb|CX705398.1|CX705398
genomic: TTATATATTTTGCTACATCAATGGGTACACATACAATGGCTGCTCATCAAgttagtgttt ... ccctcttcagGTCATGGTCCAAACCTATTTAATGTGTACCGTATGGGGTGAACCTCTCTCC
EST: TTATATATTTTGCTACATCAATGGGTACACATACAATGGCTGCTCATCAA GTCATGGTCCAAACCTATTTAATGTGTACCGTATGGGGTGAACCTCTCTCC
genomic: TTATATATTTTGCTACATCAATGGGTACACATACAATGGCTGCTCATCAAgttagtgttt ... ccctcttcagGTCATGGTCCAAACCTATTTAATGTGTACCGTATGGGGTGAACCTCTCTCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGGCTTTTTACGCACTACTTATATATTTTGCTACATCAATGGGTACACATACAATGGCTGCTCATCAAgttagtgttttttttgtttcctgttttgtgactattccttcctttgcctgccatctgagctttttttaaaaacaaaaactcaaggccagtgataacttcattccctcttcag
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